[Rivet] ISSUE Installing RIVET on LXPLUS

[MICHELE GROSSI]

Hello,
thank you for the support.
Yes, it would be great if someone can double check it...
Regards,
Michele

2018-01-02 22:02 GMT+01:00 Andy Buckley <andy.buckley at cern.ch>:

> Very strange -- I tested on lxplus6 and 7 with both the scripts and this
> GCC version and it worked fine. If another Rivet team member could check,
> that'd be great... in case there's something in my lxplus shell environment
> that protected me from a problem.
>
> Andy
>
>
> On Jan 2 2018, at 2:39 pm, Holger Schulz <holger.schulz at durham.ac.uk>
> wrote:
>
>> Hi Michele,
>>
>> can you check whether the same thing happens with the non-lcg version of
>> the
>> bootstrap script, too?
>>
>> Thanks,
>> Holger
>>
>> On 02/01/18 08:31, MICHELE GROSSI wrote:
>>
>> Deat RIVET Team,
>> I am following the instruction to setup and install Rivet on lxplus but I
>> got error.
>> May I ask your support,
>> Thank you
>> Michele
>>
>> In the following the output of:
>>
>> mgrossi at lxplus068 mgrossi]$ ./rivet-bootstrap-lcg
>> /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++
>> accepts the -std=c++11 flag: hurrah! Continuing installation...
>>
>> Running Rivet bootstrap script with LCG HepMC, FastJet, and GSL
>> Building Rivet 2.5.4, YODA 1.6.7
>>
>> Building YODA
>> --2018-01-02 15:02:52--  http://www.hepforge.org/
>> archive/yoda/YODA-1.6.7.tar.gz
>> Resolving www.hepforge.org... 129.234.186.115
>> Connecting to www.hepforge.org|129.234.186.115|:80... connected.
>> HTTP request sent, awaiting response... 301 Moved Permanently
>> Location: https://www.hepforge.org/archive/yoda/YODA-1.6.7.tar.gz
>> [following]
>> --2018-01-02 15:02:52--  https://www.hepforge.org/
>> archive/yoda/YODA-1.6.7.tar.gz
>> Connecting to www.hepforge.org|129.234.186.115|:443... connected.
>> HTTP request sent, awaiting response... 200 OK
>> Length: 1097370 (1.0M) [application/x-gzip]
>> Saving to: “STDOUT”
>>
>> 100%[==========================================================>]
>> 1,097,370   1.45M/s   in 0.7s
>>
>> 2018-01-02 15:02:53 (1.45 MB/s) - written to stdout [1097370/1097370]
>>
>> checking for a BSD-compatible install... /usr/bin/install -c
>> checking whether build environment is sane... yes
>> checking for a thread-safe mkdir -p... /bin/mkdir -p
>> checking for gawk... gawk
>> checking whether make sets $(MAKE)... yes
>> checking whether make supports nested variables... yes
>> checking whether make supports nested variables... (cached) yes
>> checking for style of include used by make... GNU
>> checking for gcc... /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/gcc
>> checking whether the C compiler works... yes
>> checking for C compiler default output file name... a.out
>> checking for suffix of executables...
>> checking whether we are cross compiling... no
>> checking for suffix of object files... o
>> checking whether we are using the GNU C compiler... yes
>> checking whether /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/gcc accepts -g... yes
>> checking for /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/gcc option to accept ISO C89... none needed
>> checking whether /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/gcc understands -c and -o together... yes
>> checking dependency style of /cvmfs/sft.cern.ch/lcg/
>> releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc... gcc3
>> checking for ar... ar
>> checking the archiver (ar) interface... ar
>> checking for sw_vers... no
>> checking whether we are using the GNU C++ compiler... yes
>> checking whether /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/g++ accepts -g... yes
>> checking dependency style of /cvmfs/sft.cern.ch/lcg/
>> releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++... gcc3
>> checking whether /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/g++ supports C++11 features by default... no
>> checking whether /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/g++ supports C++11 features with -std=c++11... yes
>> checking whether ln -s works... yes
>> checking build system type... x86_64-unknown-linux-gnu
>> checking host system type... x86_64-unknown-linux-gnu
>> checking how to print strings... printf
>> checking for a sed that does not truncate output... /bin/sed
>> checking for grep that handles long lines and -e... /bin/grep
>> checking for egrep... /bin/grep -E
>> checking for fgrep... /bin/grep -F
>> checking for ld used by /cvmfs/sft.cern.ch/lcg/
>> releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc... /usr/bin/ld
>> checking if the linker (/usr/bin/ld) is GNU ld... yes
>> checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
>> checking the name lister (/usr/bin/nm -B) interface... BSD nm
>> checking the maximum length of command line arguments... 1966080
>> checking whether the shell understands some XSI constructs... yes
>> checking whether the shell understands "+="... yes
>> checking how to convert x86_64-unknown-linux-gnu file names to
>> x86_64-unknown-linux-gnu format... func_convert_file_noop
>> checking how to convert x86_64-unknown-linux-gnu file names to toolchain
>> format... func_convert_file_noop
>> checking for /usr/bin/ld option to reload object files... -r
>> checking for objdump... objdump
>> checking how to recognize dependent libraries... pass_all
>> checking for dlltool... no
>> checking how to associate runtime and link libraries... printf %s\n
>> checking for archiver @FILE support... @
>> checking for strip... strip
>> checking for ranlib... ranlib
>> checking command to parse /usr/bin/nm -B output from /cvmfs/
>> sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc object...
>> ok
>> checking for sysroot... no
>> checking for mt... no
>> checking if : is a manifest tool... no
>> checking how to run the C preprocessor... /cvmfs/sft.cern.ch/lcg/
>> releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc -E
>> checking for ANSI C header files... yes
>> checking for sys/types.h... yes
>> checking for sys/stat.h... yes
>> checking for stdlib.h... yes
>> checking for string.h... yes
>> checking for memory.h... yes
>> checking for strings.h... yes
>> checking for inttypes.h... yes
>> checking for stdint.h... yes
>> checking for unistd.h... yes
>> checking for dlfcn.h... yes
>> checking for objdir... .libs
>> checking if /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/gcc supports -fno-rtti -fno-exceptions... no
>> checking for /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/gcc option to produce PIC... -fPIC -DPIC
>> checking if /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/gcc PIC flag -fPIC -DPIC works... yes
>> checking if /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/gcc static flag -static works... yes
>> checking if /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/gcc supports -c -o file.o... yes
>> checking if /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/gcc supports -c -o file.o... (cached) yes
>> checking whether the /cvmfs/sft.cern.ch/lcg/
>> releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc linker (/usr/bin/ld -m
>> elf_x86_64) supports shared libraries... yes
>> checking whether -lc should be explicitly linked in... no
>> checking dynamic linker characteristics... GNU/Linux ld.so
>> checking how to hardcode library paths into programs... immediate
>> checking for shl_load... no
>> checking for shl_load in -ldld... no
>> checking for dlopen... no
>> checking for dlopen in -ldl... yes
>> checking whether a program can dlopen itself... yes
>> checking whether a statically linked program can dlopen itself... no
>> checking whether stripping libraries is possible... yes
>> checking if libtool supports shared libraries... yes
>> checking whether to build shared libraries... yes
>> checking whether to build static libraries... no
>> checking how to run the C++ preprocessor... /cvmfs/sft.cern.ch/lcg/
>> releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11 -E
>> checking for ld used by /cvmfs/sft.cern.ch/lcg/
>> releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11... /usr/bin/ld
>> -m elf_x86_64
>> checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
>> checking whether the /cvmfs/sft.cern.ch/lcg/
>> releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11 linker
>> (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
>> checking for /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/g++ -std=c++11 option to produce PIC... -fPIC -DPIC
>> checking if /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/g++ -std=c++11 PIC flag -fPIC -DPIC works... yes
>> checking if /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/g++ -std=c++11 static flag -static works... yes
>> checking if /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/g++ -std=c++11 supports -c -o file.o... yes
>> checking if /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/g++ -std=c++11 supports -c -o file.o... (cached) yes
>> checking whether the /cvmfs/sft.cern.ch/lcg/
>> releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11 linker
>> (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
>> checking dynamic linker characteristics... (cached) GNU/Linux ld.so
>> checking how to hardcode library paths into programs... immediate
>> checking if the /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/g++ -std=c++11 compiler accepts the -pedantic flag... yes
>> checking if the /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/g++ -std=c++11 compiler accepts the -Wall flag... yes
>> checking for root-config... /usr/bin/root-config
>> checking ROOT version... 5.34/36 (5,34,36)
>> configure: Building extra ROOT compatibility tools
>> checking for python... /cvmfs/sft.cern.ch/lcg/
>> releases/LCG_85/Python/2.7.10/x86_64-slc6-gcc49-opt/bin/python
>> checking for a version of Python >= '2.1.0'... yes
>> checking for a version of Python >= '2.6'... yes
>> checking for the distutils Python package... yes
>> checking for Python include path... -I/cvmfs/sft.cern.ch/lcg/
>> releases/LCG_85/Python/2.7.10/x86_64-slc6-gcc49-opt/include/python2.7
>> checking for Python library path... -L/cvmfs/sft.cern.ch/lcg/
>> releases/LCG_85/Python/2.7.10/x86_64-slc6-gcc49-opt/lib -lpython2.7
>> checking for Python site-packages path... /cvmfs/sft.cern.ch/lcg/
>> releases/LCG_85/Python/2.7.10/x86_64-slc6-gcc49-opt/lib/
>> python2.7/site-packages
>> checking python extra libraries... -lpthread -ldl  -lutil -lm
>> checking python extra linking flags...
>> checking consistency of all components of python development
>> environment... yes
>> checking for python version... 2.7
>> checking for python platform... linux2
>> checking for python script directory... ${prefix}/lib/python2.7/site-
>> packages
>> checking for python extension module directory...
>> ${exec_prefix}/lib/python2.7/site-packages
>> checking for Cython >= 0.23.5... no
>> checking for pyext/yoda/core.cpp... yes
>> checking if the /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/g++ -std=c++11 compiler accepts the
>> -Wno-unused-but-set-variable flag... yes
>> checking if the /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/g++ -std=c++11 compiler accepts the -Wno-sign-compare
>> flag... yes
>> checking if the /cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_
>> 64-slc6/bin/g++ -std=c++11 compiler accepts the -Wno-strict-prototypes
>> flag... no
>> configure: All Python build checks successful: 'yoda' Python extension
>> will be built
>> checking for doxygen... /usr/bin/doxygen
>> checking that generated files are newer than configure... done
>> configure: creating ./config.status
>> config.status: creating Makefile
>> config.status: creating Doxyfile
>> config.status: creating include/Makefile
>> config.status: creating include/YODA/Makefile
>> config.status: creating src/Makefile
>> config.status: creating src/tinyxml/Makefile
>> config.status: creating tests/Makefile
>> config.status: creating pyext/Makefile
>> config.status: creating pyext/setup.py
>> config.status: creating pyext/yoda/Makefile
>> config.status: creating bin/Makefile
>> config.status: creating bin/yoda-config
>> config.status: creating yodaenv.sh
>> config.status: creating yoda.pc
>> config.status: creating include/YODA/Config/DummyConfig.h
>> config.status: creating include/YODA/Config/YodaConfig.h
>> config.status: include/YODA/Config/YodaConfig.h is unchanged
>> config.status: creating include/YODA/Config/BuildConfig.h
>> config.status: include/YODA/Config/BuildConfig.h is unchanged
>> config.status: executing depfiles commands
>> config.status: executing libtool commands
>>
>> ************************************************************
>> YODA CONFIGURED!
>>
>> Now build and install (to the /afs/cern.ch/work/m/mgrossi/RIVET/local
>> tree) with e.g.
>> make -j2 && make -j2 install
>> ************************************************************
>> Making all in src
>> make[1]: Entering directory `/afs/cern.ch/work/m/mgrossi/
>> RIVET/YODA-1.6.7/src'
>> Making all in tinyxml
>> make[2]: Entering directory `/afs/cern.ch/work/m/mgrossi/
>> RIVET/YODA-1.6.7/src/tinyxml'
>>   CXX      libtinyxml_la-tinyxmlerror.lo
>>   CXX      libtinyxml_la-tinystr.lo
>>   CXX      libtinyxml_la-tinyxml.lo
>> g++: internal compiler error: Segmentation fault (program cc1plus)
>> 0x409edc execute
>>     ../../gcc-4.9.3/gcc/gcc.c:2854
>> 0x40a2a4 do_spec_1
>>     ../../gcc-4.9.3/gcc/gcc.c:4658
>> 0x40cb66 process_brace_body
>>     ../../gcc-4.9.3/gcc/gcc.c:5941
>> 0x40cb66 handle_braces
>>     ../../gcc-4.9.3/gcc/gcc.c:5855
>> 0x40b119 do_spec_1
>>     ../../gcc-4.9.3/gcc/gcc.c:5312
>> 0x40cb66 process_brace_body
>>     ../../gcc-4.9.3/gcc/gcc.c:5941
>> 0x40cb66 handle_braces
>>     ../../gcc-4.9.3/gcc/gcc.c:5855
>> 0x40b119 do_spec_1
>>     ../../gcc-4.9.3/gcc/gcc.c:5312
>> 0x40ae83 do_spec_1
>>     ../../gcc-4.9.3/gcc/gcc.c:5427
>> 0x40cb66 process_brace_body
>>     ../../gcc-4.9.3/gcc/gcc.c:5941
>> 0x40cb66 handle_braces
>>     ../../gcc-4.9.3/gcc/gcc.c:5855
>> 0x40b119 do_spec_1
>>     ../../gcc-4.9.3/gcc/gcc.c:5312
>> 0x40cb66 process_brace_body
>>     ../../gcc-4.9.3/gcc/gcc.c:5941
>> 0x40cb66 handle_braces
>>     ../../gcc-4.9.3/gcc/gcc.c:5855
>> 0x40b119 do_spec_1
>>     ../../gcc-4.9.3/gcc/gcc.c:5312
>> 0x40cb66 process_brace_body
>>     ../../gcc-4.9.3/gcc/gcc.c:5941
>> 0x40cb66 handle_braces
>>     ../../gcc-4.9.3/gcc/gcc.c:5855
>> 0x40b119 do_spec_1
>>     ../../gcc-4.9.3/gcc/gcc.c:5312
>> 0x40cb66 process_brace_body
>>     ../../gcc-4.9.3/gcc/gcc.c:5941
>> 0x40cb66 handle_braces
>>     ../../gcc-4.9.3/gcc/gcc.c:5855
>> Please submit a full bug report,
>> with preprocessed source if appropriate.
>> Please include the complete backtrace with any bug report.
>> See <http://gcc.gnu.org/bugs.html> for instructions.
>> make[2]: *** [libtinyxml_la-tinystr.lo] Error 1
>> make[2]: *** Waiting for unfinished jobs....
>> make[2]: Leaving directory `/afs/cern.ch/work/m/mgrossi/
>> RIVET/YODA-1.6.7/src/tinyxml'
>> make[1]: *** [all-recursive] Error 1
>> make[1]: Leaving directory `/afs/cern.ch/work/m/mgrossi/
>> RIVET/YODA-1.6.7/src'
>> make: *** [all-recursive] Error 1
>> [mgrossi at lxplus068 RIVET]$ gcc --v
>> gcc: error: unrecognized command line option ‘--v’
>> gcc: fatal error: no input files
>> compilation terminated.
>> [mgrossi at lxplus068 RIVET]$ gcc -version
>> gcc: error: unrecognized command line option ‘-version’
>> gcc: fatal error: no input files
>> compilation terminated.
>>
>> HERE the gcc version
>> [mgrossi at lxplus068 RIVET]$ gcc --version
>> gcc (GCC) 4.9.3
>> Copyright (C) 2015 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions.  There is NO
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
>> PURPOSE.
>>
>>
>> _______________________________________________
>> Rivet mailing listRivet at projects.hepforge.orghttps://www.hepforge.org/lists/listinfo/rivet
>>
>>
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>> Rivet at projects.hepforge.org
>> https://www.hepforge.org/lists/listinfo/rivet
>>
>
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