[Rivet] Fwd: CPC Program Library - CPC-S-13-00112

Frank Siegert frank.siegert at cern.ch
Tue Mar 19 14:59:17 GMT 2013
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Dear fellow-Riveters,

During the submission process to CPC the program code gets included in
the CPC Program Library. I submitted the tarball and corresponding
instructions (referring to rivet-bootstrap), but on the machine of the
librarian (Ubuntu 12.04 64bit) the bootstrap script fails with a
linker error, cf. attachment:

/usr/bin/python mk-analysis-html analyses.html
Traceback (most recent call last):
  File "mk-analysis-html", line 43, in <module>
    import rivet
  File "/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/pyext/build/lib.linux-x86_64-2.7/rivet/__init__.py",
line 16, in <module>
    from rivetwrap import *
  File "/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/pyext/build/lib.linux-x86_64-2.7/rivet/rivetwrap.py",
line 26, in <module>
    _rivetwrap = swig_import_helper()
  File "/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/pyext/build/lib.linux-x86_64-2.7/rivet/rivetwrap.py",
line 22, in swig_import_helper
    _mod = imp.load_module('_rivetwrap', fp, pathname, description)
ImportError: /home/cphillips/CPC/newprograms/CPC-D-13-00117/RIVET/lib/libfastjetplugins.so.0:
undefined symbol: _ZN7siscone8Csiscone12_banner_ostrE

I'm not able to reproduce this on my Laptop (Ubuntu 12.04 32bit), and
before going into remote debugging I was wondering whether any of you
have seen this kind of error before?

(As an aside: Should we maybe disable the building of the manual
during rivet-bootstrap by default to avoid these kinds of Python
problems?)

Cheers,
Frank


---------- Forwarded message ----------
From: CPC Program Library <cpc at qub.ac.uk>
Date: 19 March 2013 15:34
Subject: Re: CPC Program Library - CPC-S-13-00112
To: Frank Siegert <frank.siegert at cern.ch>


Hi Frank,

Sorry, not good news, I'm afraid.
I got the same error again though this time the bootstrap ran without
any interruption.
I have attached the screen output file.

My machine is a 64 bit, but would that cause the problem?


Best regards,

Carol
>
> Dear Carol,
>
> I have tried this out on an Ubuntu 12.04 machine (32bit installation),
> and I cannot reproduce the linking error at the end of your logfile.
> So I would hope that this is just a spurious error from the previously
> failed installation, and would appreciate, if you could try this again
> in a fresh directory and shell. If the error remains the same, I'll
> come back with a few debugging questions such that I can reproduce and
> fix it.
>
> Cheers,
> Frank
>
>
> On 15 March 2013 13:19, CPC Program Library <cpc at qub.ac.uk> wrote:
>>
>> Hi Frank,
>>
>> Thanks for your email.
>>
>> I ran the rivet-bootstrap script again which got a bit further but got stuck
>> on Boost.
>>   I gathered from the web ManualInstallation instructions  that it expects
>> boost and swig to be installed which they weren't on my machine (HP
>> workstation, ubuntu 12.04/ gcc-4.6.3).
>>
>> I installed them from the ubuntu repository and carried on.
>> The rivet build gave an undefined symbol error. I have attached a file
>> showing the screen output of my various rivet-bootstrap runs.
>> I wasn't sure if I should carry on after installing the necessary software
>> or should delete everything and start again but assumed carrying on would be
>> okay.
>> Hope I was right :).
>>
>> We are off on Monday for St. Patrick's Day (Sunday).
>> Happy St. Patrick's Day!
>>
>> Best regards,
>>
>> Carol
>>
>>
>>
>>> Dear Carol,
>>>
>>> How embarassing that it fails within the first 10 seconds!
>>>
>>> HepMC, one of Rivet's dependencies which is installed with the help of
>>> the bootstrap script, has recently changed its build system from a
>>> ./configure script to cmake, which our bootstrap script doesn't yet
>>> know how to handle.
>>>
>>> For the time being, I have reverted this in the bootstrap script, so
>>> if you start from scratch by downloading the bootstrap script again,
>>> everything should work now.
>>>
>>> Sorry again for the inconvenience, and please let me know if you
>>> encounter any other issues. There was an issue with the FastJet
>>> (another dependency) server yesterday where the bootstrap script
>>> couldn't download the tarball, but that seems to be fixed now, at
>>> least it works for me.
>>>
>>> Cheers,
>>> Frank
>>>
>>>
>>> On 14 March 2013 14:04, CPC Program Library<cpc at qub.ac.uk>  wrote:
>>>>
>>>> Dear Frank,
>>>>
>>>> I have started to test your program but have not got very far.
>>>> I thought I would use the bootstrap program but when starting to install
>>>> HepMC it complains about a lack of configure file.
>>>> I have attached a copy of my screen input/output. What am I doing wrong?
>>>> Sorry if I've missed something fundamental.
>>>>
>>>> Best regards,
>>>>
>>>> Carol
>>>>
>>>>
>>>>> Dear Carol,
>>>>>
>>>>> Ok, thanks. Let me know if you encounter any problems, or if I forgot
>>>>> anything in the instructions.
>>>>>
>>>>> Does the CPC review process continue in the meantime, i.e. should I
>>>>> expect to hear from an editor/referee independently from your testing?
>>>>>
>>>>> Cheers,
>>>>> Frank
>>>>>
>>>>> On 4 March 2013 10:42, CPC Program Library<cpc at qub.ac.uk>  wrote:
>>>>>>
>>>>>> Dear Frank,
>>>>>>
>>>>>> Thank you for sending the code file.
>>>>>> The Library is quite busy at the moment so it may be a couple of weeks
>>>>>> before I get around to testing your program.
>>>>>> When I do, I'll let you know how I get on.
>>>>>>
>>>>>> Best regards,
>>>>>>
>>>>>> Carol
-------------- next part --------------
cphillips at ubuntu:~/CPC/newprograms/CPC-D-13-00117$ ./rivet-bootstrap --prefix=/home/cphillips/CPC/newprograms/CPC-D-13-00117/RIVET
Getting http://www.hepforge.org/archive/rivet/Rivet-1.8.2.tar.gz
Downloading http://www.hepforge.org/archive/rivet/Rivet-1.8.2.tar.gz
Downloading http://lcgapp.cern.ch/project/simu/HepMC/download/HepMC-2.06.06.tar.gz
Configuring in /home/cphillips/CPC/newprograms/CPC-D-13-00117/build/HepMC-2.06.06: ./configure --prefix=/home/cphillips/CPC/newprograms/CPC-D-13-00117/RIVET --with-momentum=GEV --with-length=MM
Building in /home/cphillips/CPC/newprograms/CPC-D-13-00117/build/HepMC-2.06.06: make -j2 && make -j2 install
Downloading http://www.fastjet.fr/repo/fastjet-3.0.3.tar.gz
Configuring in /home/cphillips/CPC/newprograms/CPC-D-13-00117/build/fastjet-3.0.3: ./configure --prefix=/home/cphillips/CPC/newprograms/CPC-D-13-00117/RIVET --enable-shared --enable-allcxxplugins
Building in /home/cphillips/CPC/newprograms/CPC-D-13-00117/build/fastjet-3.0.3: make -j2 && make -j2 install
Configuring in /home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2: ./configure --prefix=/home/cphillips/CPC/newprograms/CPC-D-13-00117/RIVET  --with-lcgtag=x86_64-Linux-gcc46-opt --with-hepmc=/home/cphillips/CPC/newprograms/CPC-D-13-00117/RIVET --with-fastjet=/home/cphillips/CPC/newprograms/CPC-D-13-00117/RIVET --disable-pdfmanual
Building in /home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2: make -j2 && make -j2 install
Making all in src
make[1]: Entering directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/src'
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copying selected object files to avoid basename conflicts...
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MC_VH2BB.cc: In member function 'std::vector<double> Rivet::MC_VH2BB::boostAngles(const Rivet::FourMomentum&, const Rivet::FourMomentum&, const Rivet::FourMomentum&)':
MC_VH2BB.cc:57:14: warning: unused variable 'test' [-Wunused-variable]
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make[2]: Leaving directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/src/Analyses'
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/usr/bin/swig -c++ -python -I../../include -o rivetwrap_wrap.cc rivetwrap.i
/usr/bin/swig -c++ -python -I../../include -o rivetwrap_wrap.cc rivetwrap.i
make[2]: Leaving directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/pyext/rivet'
Making all in .
make[2]: Entering directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/pyext'
/usr/bin/python setup.py build
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.7
copying lighthisto.py -> build/lib.linux-x86_64-2.7
copying spiresbib.py -> build/lib.linux-x86_64-2.7
creating build/lib.linux-x86_64-2.7/rivet
copying rivet/__init__.py -> build/lib.linux-x86_64-2.7/rivet
copying rivet/rivetwrap.py -> build/lib.linux-x86_64-2.7/rivet
running build_ext
building '_rivetwrap' extension
creating build/temp.linux-x86_64-2.7
creating build/temp.linux-x86_64-2.7/rivet
gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -DSWIG_TYPE_TABLE=hepmccompat -I/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/include -I/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/include -I/home/cphillips/CPC/newprograms/CPC-D-13-00117/RIVET/include -I/usr/include -I/usr/include -I/usr/include/python2.7 -c ./rivet/rivetwrap_wrap.cc -o build/temp.linux-x86_64-2.7/./rivet/rivetwrap_wrap.o -O2
cc1plus: warning: command line option â??-Wstrict-prototypesâ?? is valid for Ada/C/ObjC but not for C++ [enabled by default]
g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/./rivet/rivetwrap_wrap.o -L/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/src/.libs -L../src/Tools/yaml-cpp/.libs -L/home/cphillips/CPC/newprograms/CPC-D-13-00117/RIVET/lib -lHepMC -lRivet -o build/lib.linux-x86_64-2.7/rivet/_rivetwrap.so
make[2]: Leaving directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/pyext'
make[1]: Leaving directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/pyext'
Making all in data
make[1]: Entering directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/data'
Making all in refdata
make[2]: Entering directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/data/refdata'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/data/refdata'
Making all in anainfo
make[2]: Entering directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/data/anainfo'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/data/anainfo'
Making all in plotinfo
make[2]: Entering directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/data/plotinfo'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/data/plotinfo'
Making all in texmf
make[2]: Entering directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/data/texmf'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/data/texmf'
make[2]: Entering directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/data'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/data'
make[1]: Leaving directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/data'
Making all in include
make[1]: Entering directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/include'
Making all in Rivet
make[2]: Entering directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/include/Rivet'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/include/Rivet'
make[2]: Entering directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/include'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/include'
make[1]: Leaving directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/include'
Making all in bin
make[1]: Entering directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/bin'
  CXX    rivet_nopy-rivet-nopy.o
  CXXLD  rivet-nopy
make[1]: Leaving directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/bin'
Making all in doc
make[1]: Entering directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/doc'
LD_LIBRARY_PATH=../src/.libs:../src/Tools/yaml-cpp/.libs:/home/cphillips/CPC/newprograms/CPC-D-13-00117/RIVET/lib:/home/cphillips/CPC/newprograms/CPC-D-13-00117/RIVET/lib:/usr/local/lib::/home/cphillips/CPC/newprograms/CPC-D-13-00117/RIVET/lib \
DYLD_LIBRARY_PATH=../src/.libs:../src/Tools/yaml-cpp/.libs:/home/cphillips/CPC/newprograms/CPC-D-13-00117/RIVET/lib:/home/cphillips/CPC/newprograms/CPC-D-13-00117/RIVET/lib::/home/cphillips/CPC/newprograms/CPC-D-13-00117/RIVET/lib \
RIVET_INFO_PATH=../data/anainfo \
PYTHONPATH=../pyext: \
/usr/bin/python mk-analysis-html analyses.html
Traceback (most recent call last):
  File "mk-analysis-html", line 43, in <module>
    import rivet
  File "/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/pyext/build/lib.linux-x86_64-2.7/rivet/__init__.py", line 16, in <module>
    from rivetwrap import *
  File "/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/pyext/build/lib.linux-x86_64-2.7/rivet/rivetwrap.py", line 26, in <module>
    _rivetwrap = swig_import_helper()
  File "/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/pyext/build/lib.linux-x86_64-2.7/rivet/rivetwrap.py", line 22, in swig_import_helper
    _mod = imp.load_module('_rivetwrap', fp, pathname, description)
ImportError: /home/cphillips/CPC/newprograms/CPC-D-13-00117/RIVET/lib/libfastjetplugins.so.0: undefined symbol: _ZN7siscone8Csiscone12_banner_ostrE
make[1]: *** [analyses.html] Error 1
make[1]: Leaving directory `/home/cphillips/CPC/newprograms/CPC-D-13-00117/build/Rivet-1.8.2/doc'
make: *** [all-recursive] Error 1
cphillips at ubuntu:~/CPC/newprograms/CPC-D-13-00117$
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