[HepMCVisual] Seg fault when testing HepMCBrowser

Sebastian BĂśser sboeser at hep.ucl.ac.uk
Mon Mar 23 12:13:37 GMT 2009
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Hi Christian,

your critique was fair enough as indeed for 14.2.20.3 I didn't work ;)

These are now a regular CMT package, located under graphics/HepMCVisual 
and graphics/HepMCBrowser, so you can use the ususal cmt co ...
But in release 15, it should be included, so the only thing you probably 
want to do (which I admit is not written anywhere):

get_files -jo HepMCBrowser_jobOptions.py

and adapt it for your input file.

Cheers, Sebastian

On Mon, 23 Mar 2009, Christian Ohm wrote:

> Hi Sebastian,
>
> Sorry for claiming HepMCVisual doesn't work at today's poster session,
> I felt a little bad afterwards.. I tried it under 14.2.20.3 some time
> ago, and had trouble (see below). However, I tested it now in 15.0.0
> and it works! As I said, my impression of this package is very
> positive. Tools like this definitely help to increase my understanding
> of pp collisions and the project is very well documented which,
> unfortunately, is not very common in our field...
>
> Are the packages also available in a SVN/CVS repository at CERN for
> easier installation?
>
> Best regards and thanks for these packages!
>
> Christian
>
>
>
> On Feb 6, 2009, at 1:05 AM, Christian Ohm wrote:
>
>> Hi,
>>
>> I've always wanted something like HepMCVisual/HepMCBrowser so I was
>> excited to test it when I heard about it. I installed and compiled
>> both packages in 14.2.20.3 and everything seemed fine. I made a soft
>> link to an aod and tried to run the example job options according to
>> the instructions. Unfortunately I get a seg fault, see full log
>> below. Any ideas what went wrong?
>>
>> Cheers,
>> Christian
>>
>>
>> [lxplus243] /afs/cern.ch/user/c/cohm/testarea/14.2.20.3/
>> PhysicsAnalysis/AnalysisCommon/UserAnalysis/run > athena -i
>> HepMCBrowser_JobOptions.py
>> Py:ConfigurableDb    INFO Read module info for 3693 configurables
>> from 11 genConfDb files
>> Py:ConfigurableDb    INFO No duplicates have been found: that's good !
>> Py:Athena            INFO including file "AthenaCommon/Bootstrap.py"
>> Py:Athena            INFO including file "AthenaCommon/
>> Atlas.UnixStandardJob.py"
>> Py:Athena            INFO including file "HepMCBrowser_JobOptions.py"
>> Py:Athena            INFO => Seeking enabled.
>> TUnixSystem::SetDisplay:0: RuntimeWarning: DISPLAY not set, setting
>> it to 168-203.0-85.cust.bluewin.ch:0.0
>> ApplicationMgr       INFO Updating
>> ROOT::Reflex::PluginService::SetDebug(level) to level=0
>> ApplicationMgr    SUCCESS
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>> ======================================================================
>>                                                   Welcome to
>> ApplicationMgr $Revision: 1.72 $
>>                                          running on
>> lxplus243.cern.ch on Fri Feb  6 00:57:21 2009
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>> ======================================================================
>> ApplicationMgr       INFO Successfully loaded modules : AthenaServices
>> ApplicationMgr       INFO Application Manager Configured successfully
>> ApplicationMgr       INFO Updating
>> ROOT::Reflex::PluginService::SetDebug(level) to level=0
>> StatusCodeSvc        INFO initialize
>> PyAthenaEventLo...   INFO Initializing PyAthenaEventLoopMgr -
>> package version AthenaServices-01-33-06
>> WARNING: $POOL_CATALOG is not defined
>> using default `xmlcatalog_file:PoolFileCatalog.xml'
>> XMLFileCatalog: level[Info] Connecting to the catalog
>> PoolXMLFileCatalog: level[Info] Xerces-c initialization Number 0
>> Note: (file "(tmpfile)", line 2) File "vector" already loaded
>> PoolSvc           WARNING File is not in Catalog or does not exist.
>> PoolSvc           WARNING Do not allow this ERROR to propagate to
>> physics jobs.
>> ERROR (pool):
>> POOL> Unknown storage type requested:
>> SeekableCollection  Warning Cannot find persistency storage type.
>> Trying ROOT_StorageType
>> AOD.pool.root   Always Root file version:51800
>> AOD.pool.root   Always Root file version:51800
>> PoolSvc           WARNING File is not in Catalog or does not exist.
>> PoolSvc           WARNING Do not allow this ERROR to propagate to
>> physics jobs.
>> ERROR (pool):
>> POOL> Unknown storage type requested:
>> SeekableCollection  Warning Cannot find persistency storage type.
>> Trying ROOT_StorageType
>> AOD.pool.root   Always Root file version:51800
>> AOD.pool.root   Always Root file version:51800
>> Error in <TGVScrollBar::TGVScrollBar>: arrow_*.xpm not found
>> -------------------------------------------------------------------------------------
>> Core dump from CoreDumpSvc at Fri Feb  6 00:57:33 2009
>>
>> Caught signal 11(Segmentation fault). Details:
>>  errno = 0, code = 1 (address not mapped to object)
>>  pid   = 0, uid = 32
>>  value = (14, 0xe)
>>  addr  = 0
>>
>> Current algorithm: <NONE>
>> Algorithm stack: <EMPTY>
>> -------------------------------------------------------------------------------------
>>
>> *** Break *** segmentation violation
>> Using host libthread_db library "/lib64/tls/libthread_db.so.1".
>> Attaching to program: /proc/12388/exe, process 12388
>> [Thread debugging using libthread_db enabled]
>> [New Thread 4159502016 (LWP 12388)]
>> 0xffffe410 in __kernel_vsyscall ()
>> #1  0x00622f13 in __waitpid_nocancel () from /lib/tls/libc.so.6
>> #2  0x005cc7b9 in do_system () from /lib/tls/libc.so.6
>> #3  0x0070b98d in system () from /lib/tls/libpthread.so.0
>> #4  0xf741badf in TUnixSystem::Exec () from /afs/cern.ch/atlas/
>> offline/external/LCGCMT/LCGCMT_54g/InstallArea/i686-slc4-gcc34-opt/
>> lib/libCore.so
>> #5  0xf74214ed in TUnixSystem::StackTrace () from /afs/cern.ch/atlas/
>> offline/external/LCGCMT/LCGCMT_54g/InstallArea/i686-slc4-gcc34-opt/
>> lib/libCore.so
>> #6  0xf741e1aa in TUnixSystem::DispatchSignals () from /afs/cern.ch/
>> atlas/offline/external/LCGCMT/LCGCMT_54g/InstallArea/i686-slc4-gcc34-
>> opt/lib/libCore.so
>> #7  0xf741e238 in SigHandler () from /afs/cern.ch/atlas/offline/
>> external/LCGCMT/LCGCMT_54g/InstallArea/i686-slc4-gcc34-opt/lib/
>> libCore.so
>> #8  0xf741d485 in sighandler () from /afs/cern.ch/atlas/offline/
>> external/LCGCMT/LCGCMT_54g/InstallArea/i686-slc4-gcc34-opt/lib/
>> libCore.so
>> #9  0xf5ed4a25 in CoreDumpSvcHandler::action ()
>>   from /afs/cern.ch/atlas/software/builds/AtlasCore/14.2.20/
>> InstallArea/i686-slc4-gcc34-opt/lib/libAthenaServices.so
>> #10 <signal handler called>
>> #11 0xf51d28c1 in TGVScrollBar::SetPosition () from /afs/cern.ch/sw/
>> lcg/external/root/5.18.00d/slc4_ia32_gcc34/root/lib/libGui.so
>> #12 0xf5199623 in TGListBox::Layout () from /afs/cern.ch/sw/lcg/
>> external/root/5.18.00d/slc4_ia32_gcc34/root/lib/libGui.so
>> #13 0xf517172f in TGFrame::Resize () from /afs/cern.ch/sw/lcg/
>> external/root/5.18.00d/slc4_ia32_gcc34/root/lib/libGui.so
>> #14 0xf519932b in TGListBox::Resize () from /afs/cern.ch/sw/lcg/
>> external/root/5.18.00d/slc4_ia32_gcc34/root/lib/libGui.so
>> #15 0xf514bc8d in TGComboBox::Init () from /afs/cern.ch/sw/lcg/
>> external/root/5.18.00d/slc4_ia32_gcc34/root/lib/libGui.so
>> #16 0xf514c4db in TGComboBox::TGComboBox () from /afs/cern.ch/sw/lcg/
>> external/root/5.18.00d/slc4_ia32_gcc34/root/lib/libGui.so
>> #17 0xf53357dd in G__G__Gui2_241_0_4 () from /afs/cern.ch/sw/lcg/
>> external/root/5.18.00d/slc4_ia32_gcc34/root/lib/libGui.so
>> #18 0xf6d5ef14 in Cint::G__CallFunc::Execute () from /afs/cern.ch/
>> atlas/offline/external/LCGCMT/LCGCMT_54g/InstallArea/i686-slc4-gcc34-
>> opt/lib/libCint.so
>> #19 0xf78bddfa in PyROOT::TConstructorExecutor::Execute () from /afs/
>> cern.ch/sw/lcg/external/root/5.18.00d/slc4_ia32_gcc34/root/lib/
>> libPyROOT.so
>> #20 0xf78c2c04 in PyROOT::TMethodHolder<PyROOT::TScopeAdapter,
>> PyROOT::TMemberAdapter>::CallSafe ()
>>   from /afs/cern.ch/sw/lcg/external/root/5.18.00d/slc4_ia32_gcc34/
>> root/lib/libPyROOT.so
>> #21 0xf78c2dd8 in PyROOT::TMethodHolder<PyROOT::TScopeAdapter,
>> PyROOT::TMemberAdapter>::Execute ()
>>   from /afs/cern.ch/sw/lcg/external/root/5.18.00d/slc4_ia32_gcc34/
>> root/lib/libPyROOT.so
>> #22 0xf78b53c8 in PyROOT::TConstructorHolder<PyROOT::TScopeAdapter,
>> PyROOT::TMemberAdapter>::operator() ()
>>   from /afs/cern.ch/sw/lcg/external/root/5.18.00d/slc4_ia32_gcc34/
>> root/lib/libPyROOT.so
>> #23 0xf78ca877 in PyROOT::(anonymous namespace)::mp_call () from /
>> afs/cern.ch/sw/lcg/external/root/5.18.00d/slc4_ia32_gcc34/root/lib/
>> libPyROOT.so
>> #24 0xf7ef769c in PyObject_Call (func=0x10, arg=0xf4e63b4c, kw=0x0)
>> at Objects/abstract.c:1860
>> #25 0xf7f414e4 in slot_tp_init (self=0xf4e69534, args=0xf4e63b4c,
>> kwds=0x0) at Objects/typeobject.c:4819
>> #26 0xf7f3a57f in type_call (type=Variable "type" is not available.
>> ) at Objects/typeobject.c:436
>> #27 0xf7ef769c in PyObject_Call (func=0x10, arg=0xf4e63b4c, kw=0x0)
>> at Objects/abstract.c:1860
>> #28 0xf7f6b654 in PyEval_EvalFrameEx (f=0x99c3144, throwflag=0) at
>> Python/ceval.c:3777
>> #29 0xf7f71125 in PyEval_EvalFrameEx (f=0x99c2c1c, throwflag=0) at
>> Python/ceval.c:3652
>> #30 0xf7f71865 in PyEval_EvalCodeEx (co=0xf7a331d0,
>> globals=0xf5fb5714, locals=0x0, args=0xf4e63818, argcount=1,
>> kws=0x0, kwcount=0, defs=0x0, defcount=0,
>>    closure=0x0) at Python/ceval.c:2833
>> #31 0xf7f15a70 in function_call (func=0xf5fbaa3c, arg=0xf4e6380c,
>> kw=0x0) at Objects/funcobject.c:517
>> #32 0xf7ef769c in PyObject_Call (func=0x10, arg=0xf4e6380c, kw=0x0)
>> at Objects/abstract.c:1860
>> #33 0xf7f018ad in instancemethod_call (func=0xf5fd5f04,
>> arg=0xf4e6380c, kw=0x0) at Objects/classobject.c:2493
>> #34 0xf7ef769c in PyObject_Call (func=0x10, arg=0xf7e8f02c, kw=0x0)
>> at Objects/abstract.c:1860
>> #35 0xf7ef79e1 in PyObject_CallMethod (o=0xf7a2eecc, name=0xf4421ca5
>> "sysInitialize", format=0xf4421c91 "") at Objects/abstract.c:1891
>> #36 0xf441d6b2 in PyAthena::callPyMethod () from /afs/cern.ch/atlas/
>> software/builds/AtlasCore/14.2.20/InstallArea/i686-slc4-gcc34-opt/
>> lib/libAthenaPython.so
>> #37 0xf4410ee0 in PyAthena::Alg::initialize ()
>>   from /afs/cern.ch/atlas/software/builds/AtlasCore/14.2.20/
>> InstallArea/i686-slc4-gcc34-opt/lib/libAthenaPython.so
>> #38 0xf5bc66ae in Algorithm::sysInitialize ()
>>   from /afs/cern.ch/atlas/offline/external/GAUDI/v19r9-LCG54g/
>> InstallArea/i686-slc4-gcc34-opt/lib/libGaudiKernel.so
>> #39 0xf44122a2 in PyAthena::Alg::sysInitialize ()
>>   from /afs/cern.ch/atlas/software/builds/AtlasCore/14.2.20/
>> InstallArea/i686-slc4-gcc34-opt/lib/libAthenaPython.so
>> #40 0xf5c1f624 in MinimalEventLoopMgr::initialize ()
>>   from /afs/cern.ch/atlas/offline/external/GAUDI/v19r9-LCG54g/
>> InstallArea/i686-slc4-gcc34-opt/lib/libGaudiKernel.so
>> #41 0xf5e84b02 in AthenaEventLoopMgr::initialize ()
>>   from /afs/cern.ch/atlas/software/builds/AtlasCore/14.2.20/
>> InstallArea/i686-slc4-gcc34-opt/lib/libAthenaServices.so
>> #42 0xf5d5c805 in Service::sysInitialize () from /afs/cern.ch/atlas/
>> offline/external/GAUDI/v19r9-LCG54g/InstallArea/i686-slc4-gcc34-opt/
>> lib/libGaudiKernel.so
>> #43 0xf4873beb in ServiceManager::initializeServices ()
>>   from /afs/cern.ch/atlas/offline/external/GAUDI/v19r9-LCG54g/
>> InstallArea/i686-slc4-gcc34-opt/lib/libGaudiSvc.so
>> #44 0xf4682311 in ApplicationMgr::initialize ()
>>   from /afs/cern.ch/atlas/offline/external/GAUDI/v19r9-LCG54g/
>> InstallArea/i686-slc4-gcc34-opt/lib/libGaudiSvc.so
>> #45 0xf4ed68e7 in (anonymous namespace)::method_4216 ()
>>   from /afs/cern.ch/atlas/offline/external/GAUDI/v19r9-LCG54g/
>> InstallArea/i686-slc4-gcc34-opt/lib/libGaudiKernelDict.so
>> #46 0xf5f9326c in ROOT::Cintex::Method_stub_with_context () from /
>> afs/cern.ch/sw/lcg/external/root/5.18.00d/slc4_ia32_gcc34/root/lib/
>> libCintex.so
>> #47 0x097f90ae in ?? ()
>> #48 0x097f9000 in ?? ()
>> #49 0x09969cc4 in ?? ()
>> #50 0x00000000 in ?? ()
>> Shortened traceback (most recent user call last):
>>  File "/afs/cern.ch/atlas/software/builds/AtlasCore/14.2.20/
>> InstallArea/share/bin/athena.py", line 386, in <module>
>>    include( script )
>>  File "./HepMCBrowser_JobOptions.py", line 58, in <module>
>>    if theApp.initialize().isFailure():
>>  File "/afs/cern.ch/atlas/offline/external/GAUDI/v19r9-LCG54g/
>> InstallArea/python/GaudiPython/Bindings.py", line 239, in initialize
>>    return self._isvc.initialize()
>> SystemError: problem in C++; program state has been reset
>> athena>
>> ApplicationMgr      FATAL finalize: Invalid state "Configured"
>> ApplicationMgr       INFO Application Manager Terminated successfully
>> Py:Athena            INFO leaving with code 32: "exception raised
>> during initialization"
>>
>
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-----------------------------------------------

      \|/     Sebastian Boeser
     /  ~~
     @--OO    University College London
     \   ?    Gower Street
      \  v    WC1E 6BT London
       ||     Tel.: +44/(0)20/7679 1376
              sboeser at hep.ucl.ac.uk
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