[HepMCVisual] Seg fault when testing HepMCBrowser
Christian Ohm
ohm at physto.se
Fri Feb 6 00:05:25 GMT 2009
Hi,
I've always wanted something like HepMCVisual/HepMCBrowser so I was
excited to test it when I heard about it. I installed and compiled
both packages in 14.2.20.3 and everything seemed fine. I made a soft
link to an aod and tried to run the example job options according to
the instructions. Unfortunately I get a seg fault, see full log below.
Any ideas what went wrong?
Cheers,
Christian
[lxplus243] /afs/cern.ch/user/c/cohm/testarea/14.2.20.3/
PhysicsAnalysis/AnalysisCommon/UserAnalysis/run > athena -i
HepMCBrowser_JobOptions.py
Py:ConfigurableDb INFO Read module info for 3693 configurables from
11 genConfDb files
Py:ConfigurableDb INFO No duplicates have been found: that's good !
Py:Athena INFO including file "AthenaCommon/Bootstrap.py"
Py:Athena INFO including file "AthenaCommon/
Atlas.UnixStandardJob.py"
Py:Athena INFO including file "HepMCBrowser_JobOptions.py"
Py:Athena INFO => Seeking enabled.
TUnixSystem::SetDisplay:0: RuntimeWarning: DISPLAY not set, setting it
to 168-203.0-85.cust.bluewin.ch:0.0
ApplicationMgr INFO Updating
ROOT::Reflex::PluginService::SetDebug(level) to level=0
ApplicationMgr SUCCESS
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========================================================================
Welcome to
ApplicationMgr $Revision: 1.72 $
running on
lxplus243.cern.ch on Fri Feb 6 00:57:21 2009
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========================================================================
ApplicationMgr INFO Successfully loaded modules : AthenaServices
ApplicationMgr INFO Application Manager Configured successfully
ApplicationMgr INFO Updating
ROOT::Reflex::PluginService::SetDebug(level) to level=0
StatusCodeSvc INFO initialize
PyAthenaEventLo... INFO Initializing PyAthenaEventLoopMgr - package
version AthenaServices-01-33-06
WARNING: $POOL_CATALOG is not defined
using default `xmlcatalog_file:PoolFileCatalog.xml'
XMLFileCatalog: level[Info] Connecting to the catalog
PoolXMLFileCatalog: level[Info] Xerces-c initialization Number 0
Note: (file "(tmpfile)", line 2) File "vector" already loaded
PoolSvc WARNING File is not in Catalog or does not exist.
PoolSvc WARNING Do not allow this ERROR to propagate to
physics jobs.
ERROR (pool):
POOL> Unknown storage type requested:
SeekableCollection Warning Cannot find persistency storage type.
Trying ROOT_StorageType
AOD.pool.root Always Root file version:51800
AOD.pool.root Always Root file version:51800
PoolSvc WARNING File is not in Catalog or does not exist.
PoolSvc WARNING Do not allow this ERROR to propagate to
physics jobs.
ERROR (pool):
POOL> Unknown storage type requested:
SeekableCollection Warning Cannot find persistency storage type.
Trying ROOT_StorageType
AOD.pool.root Always Root file version:51800
AOD.pool.root Always Root file version:51800
Error in <TGVScrollBar::TGVScrollBar>: arrow_*.xpm not found
-------------------------------------------------------------------------------------
Core dump from CoreDumpSvc at Fri Feb 6 00:57:33 2009
Caught signal 11(Segmentation fault). Details:
errno = 0, code = 1 (address not mapped to object)
pid = 0, uid = 32
value = (14, 0xe)
addr = 0
Current algorithm: <NONE>
Algorithm stack: <EMPTY>
-------------------------------------------------------------------------------------
*** Break *** segmentation violation
Using host libthread_db library "/lib64/tls/libthread_db.so.1".
Attaching to program: /proc/12388/exe, process 12388
[Thread debugging using libthread_db enabled]
[New Thread 4159502016 (LWP 12388)]
0xffffe410 in __kernel_vsyscall ()
#1 0x00622f13 in __waitpid_nocancel () from /lib/tls/libc.so.6
#2 0x005cc7b9 in do_system () from /lib/tls/libc.so.6
#3 0x0070b98d in system () from /lib/tls/libpthread.so.0
#4 0xf741badf in TUnixSystem::Exec () from /afs/cern.ch/atlas/offline/
external/LCGCMT/LCGCMT_54g/InstallArea/i686-slc4-gcc34-opt/lib/
libCore.so
#5 0xf74214ed in TUnixSystem::StackTrace () from /afs/cern.ch/atlas/
offline/external/LCGCMT/LCGCMT_54g/InstallArea/i686-slc4-gcc34-opt/lib/
libCore.so
#6 0xf741e1aa in TUnixSystem::DispatchSignals () from /afs/cern.ch/
atlas/offline/external/LCGCMT/LCGCMT_54g/InstallArea/i686-slc4-gcc34-
opt/lib/libCore.so
#7 0xf741e238 in SigHandler () from /afs/cern.ch/atlas/offline/
external/LCGCMT/LCGCMT_54g/InstallArea/i686-slc4-gcc34-opt/lib/
libCore.so
#8 0xf741d485 in sighandler () from /afs/cern.ch/atlas/offline/
external/LCGCMT/LCGCMT_54g/InstallArea/i686-slc4-gcc34-opt/lib/
libCore.so
#9 0xf5ed4a25 in CoreDumpSvcHandler::action ()
from /afs/cern.ch/atlas/software/builds/AtlasCore/14.2.20/
InstallArea/i686-slc4-gcc34-opt/lib/libAthenaServices.so
#10 <signal handler called>
#11 0xf51d28c1 in TGVScrollBar::SetPosition () from /afs/cern.ch/sw/
lcg/external/root/5.18.00d/slc4_ia32_gcc34/root/lib/libGui.so
#12 0xf5199623 in TGListBox::Layout () from /afs/cern.ch/sw/lcg/
external/root/5.18.00d/slc4_ia32_gcc34/root/lib/libGui.so
#13 0xf517172f in TGFrame::Resize () from /afs/cern.ch/sw/lcg/external/
root/5.18.00d/slc4_ia32_gcc34/root/lib/libGui.so
#14 0xf519932b in TGListBox::Resize () from /afs/cern.ch/sw/lcg/
external/root/5.18.00d/slc4_ia32_gcc34/root/lib/libGui.so
#15 0xf514bc8d in TGComboBox::Init () from /afs/cern.ch/sw/lcg/
external/root/5.18.00d/slc4_ia32_gcc34/root/lib/libGui.so
#16 0xf514c4db in TGComboBox::TGComboBox () from /afs/cern.ch/sw/lcg/
external/root/5.18.00d/slc4_ia32_gcc34/root/lib/libGui.so
#17 0xf53357dd in G__G__Gui2_241_0_4 () from /afs/cern.ch/sw/lcg/
external/root/5.18.00d/slc4_ia32_gcc34/root/lib/libGui.so
#18 0xf6d5ef14 in Cint::G__CallFunc::Execute () from /afs/cern.ch/
atlas/offline/external/LCGCMT/LCGCMT_54g/InstallArea/i686-slc4-gcc34-
opt/lib/libCint.so
#19 0xf78bddfa in PyROOT::TConstructorExecutor::Execute () from /afs/
cern.ch/sw/lcg/external/root/5.18.00d/slc4_ia32_gcc34/root/lib/
libPyROOT.so
#20 0xf78c2c04 in PyROOT::TMethodHolder<PyROOT::TScopeAdapter,
PyROOT::TMemberAdapter>::CallSafe ()
from /afs/cern.ch/sw/lcg/external/root/5.18.00d/slc4_ia32_gcc34/
root/lib/libPyROOT.so
#21 0xf78c2dd8 in PyROOT::TMethodHolder<PyROOT::TScopeAdapter,
PyROOT::TMemberAdapter>::Execute ()
from /afs/cern.ch/sw/lcg/external/root/5.18.00d/slc4_ia32_gcc34/
root/lib/libPyROOT.so
#22 0xf78b53c8 in PyROOT::TConstructorHolder<PyROOT::TScopeAdapter,
PyROOT::TMemberAdapter>::operator() ()
from /afs/cern.ch/sw/lcg/external/root/5.18.00d/slc4_ia32_gcc34/
root/lib/libPyROOT.so
#23 0xf78ca877 in PyROOT::(anonymous namespace)::mp_call () from /afs/
cern.ch/sw/lcg/external/root/5.18.00d/slc4_ia32_gcc34/root/lib/
libPyROOT.so
#24 0xf7ef769c in PyObject_Call (func=0x10, arg=0xf4e63b4c, kw=0x0) at
Objects/abstract.c:1860
#25 0xf7f414e4 in slot_tp_init (self=0xf4e69534, args=0xf4e63b4c,
kwds=0x0) at Objects/typeobject.c:4819
#26 0xf7f3a57f in type_call (type=Variable "type" is not available.
) at Objects/typeobject.c:436
#27 0xf7ef769c in PyObject_Call (func=0x10, arg=0xf4e63b4c, kw=0x0) at
Objects/abstract.c:1860
#28 0xf7f6b654 in PyEval_EvalFrameEx (f=0x99c3144, throwflag=0) at
Python/ceval.c:3777
#29 0xf7f71125 in PyEval_EvalFrameEx (f=0x99c2c1c, throwflag=0) at
Python/ceval.c:3652
#30 0xf7f71865 in PyEval_EvalCodeEx (co=0xf7a331d0,
globals=0xf5fb5714, locals=0x0, args=0xf4e63818, argcount=1, kws=0x0,
kwcount=0, defs=0x0, defcount=0,
closure=0x0) at Python/ceval.c:2833
#31 0xf7f15a70 in function_call (func=0xf5fbaa3c, arg=0xf4e6380c,
kw=0x0) at Objects/funcobject.c:517
#32 0xf7ef769c in PyObject_Call (func=0x10, arg=0xf4e6380c, kw=0x0) at
Objects/abstract.c:1860
#33 0xf7f018ad in instancemethod_call (func=0xf5fd5f04,
arg=0xf4e6380c, kw=0x0) at Objects/classobject.c:2493
#34 0xf7ef769c in PyObject_Call (func=0x10, arg=0xf7e8f02c, kw=0x0) at
Objects/abstract.c:1860
#35 0xf7ef79e1 in PyObject_CallMethod (o=0xf7a2eecc, name=0xf4421ca5
"sysInitialize", format=0xf4421c91 "") at Objects/abstract.c:1891
#36 0xf441d6b2 in PyAthena::callPyMethod () from /afs/cern.ch/atlas/
software/builds/AtlasCore/14.2.20/InstallArea/i686-slc4-gcc34-opt/lib/
libAthenaPython.so
#37 0xf4410ee0 in PyAthena::Alg::initialize ()
from /afs/cern.ch/atlas/software/builds/AtlasCore/14.2.20/
InstallArea/i686-slc4-gcc34-opt/lib/libAthenaPython.so
#38 0xf5bc66ae in Algorithm::sysInitialize ()
from /afs/cern.ch/atlas/offline/external/GAUDI/v19r9-LCG54g/
InstallArea/i686-slc4-gcc34-opt/lib/libGaudiKernel.so
#39 0xf44122a2 in PyAthena::Alg::sysInitialize ()
from /afs/cern.ch/atlas/software/builds/AtlasCore/14.2.20/
InstallArea/i686-slc4-gcc34-opt/lib/libAthenaPython.so
#40 0xf5c1f624 in MinimalEventLoopMgr::initialize ()
from /afs/cern.ch/atlas/offline/external/GAUDI/v19r9-LCG54g/
InstallArea/i686-slc4-gcc34-opt/lib/libGaudiKernel.so
#41 0xf5e84b02 in AthenaEventLoopMgr::initialize ()
from /afs/cern.ch/atlas/software/builds/AtlasCore/14.2.20/
InstallArea/i686-slc4-gcc34-opt/lib/libAthenaServices.so
#42 0xf5d5c805 in Service::sysInitialize () from /afs/cern.ch/atlas/
offline/external/GAUDI/v19r9-LCG54g/InstallArea/i686-slc4-gcc34-opt/
lib/libGaudiKernel.so
#43 0xf4873beb in ServiceManager::initializeServices ()
from /afs/cern.ch/atlas/offline/external/GAUDI/v19r9-LCG54g/
InstallArea/i686-slc4-gcc34-opt/lib/libGaudiSvc.so
#44 0xf4682311 in ApplicationMgr::initialize ()
from /afs/cern.ch/atlas/offline/external/GAUDI/v19r9-LCG54g/
InstallArea/i686-slc4-gcc34-opt/lib/libGaudiSvc.so
#45 0xf4ed68e7 in (anonymous namespace)::method_4216 ()
from /afs/cern.ch/atlas/offline/external/GAUDI/v19r9-LCG54g/
InstallArea/i686-slc4-gcc34-opt/lib/libGaudiKernelDict.so
#46 0xf5f9326c in ROOT::Cintex::Method_stub_with_context () from /afs/
cern.ch/sw/lcg/external/root/5.18.00d/slc4_ia32_gcc34/root/lib/
libCintex.so
#47 0x097f90ae in ?? ()
#48 0x097f9000 in ?? ()
#49 0x09969cc4 in ?? ()
#50 0x00000000 in ?? ()
Shortened traceback (most recent user call last):
File "/afs/cern.ch/atlas/software/builds/AtlasCore/14.2.20/
InstallArea/share/bin/athena.py", line 386, in <module>
include( script )
File "./HepMCBrowser_JobOptions.py", line 58, in <module>
if theApp.initialize().isFailure():
File "/afs/cern.ch/atlas/offline/external/GAUDI/v19r9-LCG54g/
InstallArea/python/GaudiPython/Bindings.py", line 239, in initialize
return self._isvc.initialize()
SystemError: problem in C++; program state has been reset
athena>
ApplicationMgr FATAL finalize: Invalid state "Configured"
ApplicationMgr INFO Application Manager Terminated successfully
Py:Athena INFO leaving with code 32: "exception raised
during initialization"
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