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[HepData-svn] r1376 - trunk/hepdata-webapp/src/main/java/cedar/hepdata/formats
blackhole at projects.hepforge.org
blackhole at projects.hepforge.org
Wed Aug 11 17:12:28 BST 2010
Author: whalley
Date: Wed Aug 11 17:12:28 2010
New Revision: 1376
Log:
adding trial HepML formatter
Added:
trunk/hepdata-webapp/src/main/java/cedar/hepdata/formats/HepMLFormatter.java
Added: trunk/hepdata-webapp/src/main/java/cedar/hepdata/formats/HepMLFormatter.java
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ trunk/hepdata-webapp/src/main/java/cedar/hepdata/formats/HepMLFormatter.java Wed Aug 11 17:12:28 2010 (r1376)
@@ -0,0 +1,177 @@
+package cedar.hepdata.formats;
+
+import cedar.hepdata.model.*;
+import cedar.hepdata.util.*;
+import cedar.hepdata.xml.*;
+import cedar.hepdata.db.*;
+
+import java.util.*;
+
+import org.antlr.stringtemplate.*;
+
+
+public class HepMLFormatter {
+
+ public static String format(Paper p) {
+ if(p == null) return null;
+ StringBuffer s = new StringBuffer();
+ s.append("<hepml>\n");
+ s.append(" <data timestamp=''>\n");
+ s.append(" <paper hepdataId='" + p.getHepdataId() + "' spiresId='" + p.getSpiresId() + "' redId='" + p.getRedId() + "' preprintDate=''>\n");
+ s.append(" <title>\n");
+ s.append(" " + p.getTitle() + "\n");
+ s.append(" </title>\n");
+ for (Modification mod : p.getModifications()){
+ s.append(" <modification who='" + mod.getModifier() + "' when='" + mod.getComment() + "' />\n");
+ }
+ for (String cr : p.getComments()){
+ s.append(" <comment>\n");
+ s.append(" " + cr + "\n");
+ s.append(" </comment>\n");
+ }
+ for (String auth : p.getAuthors()){
+ s.append(" <author>\n");
+ s.append(" " + auth + "\n");
+ s.append(" </author>\n");
+ }
+ for (Reference ref : p.getReferences()){
+ s.append(" <reference description='" + ref.getDescription() + "' type='" + ref.getType() + "' date='" + ref.getDate() + "' />\n");
+ }
+ for (Experiment exp : p.getExperiments()){
+ s.append(" <experiment name='" + exp.getName() + "' laboratory='" + exp.getLaboratory() + "' informalname='" + exp.getInformalName() + "' />\n");
+ }
+
+ for (Dataset ds : p.getDatasets()){
+ s.append(" <dataset id='ds-99-" + ds.getId() + "' datasetId='" + ds.getId() + "'>\n");
+ for (String ct : ds.getComments()){
+ s.append(" <comment>\n");
+ s.append(" " + ct + "\n");
+ s.append(" </comment>\n");
+ }
+ for (String dr : ds.getDsReactions()){
+ s.append(" <dsreaction>\n");
+ s.append(" " + dr + "\n");
+ s.append(" </dsreaction>\n");
+ }
+ for (String ob : ds.getDsObservables()){
+ s.append(" <dsobservable>\n");
+ s.append(" " + ob + "\n");
+ s.append(" </dsobservable>\n");
+ }
+ for (String pl : ds.getDsPlabs()){
+ s.append(" <dsplab>\n");
+ s.append(" " + pl + "\n");
+ s.append(" </dsplab>\n");
+ }
+ for (DatasetProperty dsprop : ds.getProperties()){
+ s.append(" <property");
+ if(dsprop.getName() != null){ s.append(" name='" + dsprop.getName() + "'"); }
+ if(dsprop.getUnit() != null){ s.append(" unit='" + dsprop.getUnit() + "'"); }
+ if(dsprop.getLowValue() != null){ s.append(" low='" + dsprop.getLowValue() + "'"); }
+ if(dsprop.getHighValue() != null){ s.append(" high='" + dsprop.getHighValue() + "'"); }
+ if(dsprop.getFocus() != null){ s.append(" focus='" + dsprop.getFocus() + "'"); }
+ s.append(" />\n");
+ }
+ for (DatasetError err : ds.getErrors()){
+ s.append(" <error");
+ if(err.getPlus() != null){ s.append(" plus='" + err.getPlus() + "'"); }
+ if(err.getMinus() != null){ s.append(" minus='" + err.getMinus() + "'"); }
+ if(err.getSourceType() != null){ s.append(" source='" + err.getSourceType().toShortString() + "'"); }
+ if(err.getNormType() != null){ s.append(" norm='" + err.getNormType().toSymbol() + "'"); }
+ if(err.getComment() != null){ s.append(" comment='" + err.getComment() + "'"); }
+ s.append(" />\n");
+ }
+ for (XAxis xax : ds.getXAxes()){
+ s.append(" <xaxis id='xax-99-" + xax.getId() + "' xaxisId='" + xax.getId() + "' header='" + xax.getHeader() + "'>\n");
+ s.append(" <bins>\n");
+ for (Bin bn : xax.getBins()){
+ s.append(" <bin binId='" + bn.getId() + "'");
+ if(bn.getFocus() != null){ s.append(" focus='" + bn.getFocus() + "'"); }
+ if(bn.getLowValue() != null){ s.append(" low='" + bn.getLowValue() + "'"); }
+ if(bn.getHighValue() != null){ s.append(" high='" + bn.getHighValue() + "'"); }
+ if(bn.getWidth() != null){ s.append(" width='" + bn.getWidth() + "'"); }
+ if(bn.getRelation() != null){ s.append(" relation='" + bn.getRelation().toString() + "'"); }
+ s.append(" />\n");
+ }
+ s.append(" </bins>\n");
+ s.append(" </xaxis>\n");
+ }
+ for (YAxis yax : ds.getYAxes()){
+ s.append(" <yaxis id='yax-99-" + yax.getId() + "' yaxisId='" + yax.getId() + "' header='" + yax.getHeader() + "'>\n");
+ for (AxisReaction re : yax.getReactions()){
+ s.append(" <reaction>\n");
+ s.append(" <initialstate>\n");
+ for (Particle part : re.getInitialState()){
+ s.append(" <particle");
+ if(part.getName() != null){ s.append(" name='" + part.getName() + "'"); }
+ if(part.getMultRelation() != null){ s.append(" relation='" + part.getMultRelation() + "'"); }
+ if(part.getMultiplicity() != null){ s.append(" multiplicity='" + part.getMultiplicity() + "'"); }
+ s.append(" />\n");
+ }
+ s.append(" </initialstate>\n");
+ s.append(" <finalstate>\n");
+ for (Particle part : re.getFinalState()){
+ s.append(" <particle");
+ if(part.getName() != null){ s.append(" name='" + part.getName() + "'"); }
+ if(part.getMultRelation() != null){ s.append(" relation='" + part.getMultRelation() + "'"); }
+ if(part.getMultiplicity() != null){ s.append(" multiplicity='" + part.getMultiplicity() + "'"); }
+ s.append(" />\n");
+ }
+ s.append(" </finalstate>\n");
+ s.append(" </reaction>\n");
+ }
+ for (String cy : yax.getComments()){
+ s.append(" <comment>\n");
+ s.append(" " + cy + "\n");
+ s.append(" </comment>\n");
+ }
+ for (Property prop : yax.getProperties()){
+ s.append(" <property");
+ if(prop.getName() != null){ s.append(" name='" + prop.getName() + "'"); }
+ if(prop.getUnit() != null){ s.append(" unit='" + prop.getUnit() + "'"); }
+ if(prop.getLowValue() != null){ s.append(" low='" + prop.getLowValue() + "'"); }
+ if(prop.getHighValue() != null){ s.append(" high='" + prop.getHighValue() + "'"); }
+ if(prop.getFocus() != null){ s.append(" focus='" + prop.getFocus() + "'"); }
+ s.append(" />\n");
+ }
+ s.append(" <points>\n");
+ for (AxisError err : yax.getErrors()){
+ s.append(" <error");
+ if(err.getPlus() != null){ s.append(" plus='" + err.getPlus() + "'"); }
+ if(err.getMinus() != null){ s.append(" minus='" + err.getMinus() + "'"); }
+ if(err.getSourceType() != null){ s.append(" source='" + err.getSourceType().toShortString() + "'"); }
+ if(err.getNormType() != null){ s.append(" norm='" + err.getNormType().toSymbol() + "'"); }
+ if(err.getComment() != null){ s.append(" comment='" + err.getComment() + "'"); }
+ s.append(" />\n");
+ }
+ for (Point pt : yax.getPoints()){
+ s.append(" <point pointId='" + pt.getId() + "'");
+ if(pt.getValue() != null){ s.append(" value='" + pt.getValue() + "'"); }
+ if(pt.getRelation() != null){ s.append(" relation='" + pt.getRelation() + "'"); }
+ s.append(">\n");
+ for (PointError err : pt.getErrors()){
+ s.append(" <error");
+ if(err.getPlus() != null){ s.append(" plus='" + err.getPlus() + "'"); }
+ if(err.getMinus() != null){ s.append(" minus='" + err.getMinus() + "'"); }
+ if(err.getSourceType() != null){ s.append(" source='" + err.getSourceType().toShortString() + "'"); }
+ if(err.getNormType() != null){ s.append(" norm='" + err.getNormType().toSymbol() + "'"); }
+ if(err.getComment() != null){ s.append(" comment='" + err.getComment() + "'"); }
+ s.append(" />\n");
+ }
+ s.append(" </point>\n");
+ }
+
+ s.append(" </points>\n");
+ s.append(" </yaxis>\n");
+ }
+ s.append(" </dataset>\n");
+ }
+
+ s.append(" </paper>\n");
+ s.append(" </data>\n");
+ s.append("</hepml>\n");
+ return s.toString();
+ }
+
+
+}
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