[Flexiblesusy-commits] [FlexibleSUSY/FlexibleSUSY] e8ef26: add command line option --with-tvmet-config=

GitHub noreply at github.com
Tue May 27 10:39:40 BST 2014


  Branch: refs/heads/lattice
  Home:   https://github.com/FlexibleSUSY/FlexibleSUSY
  Commit: e8ef26472a4a1a3402ba19f572dd58e1552db060
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/e8ef26472a4a1a3402ba19f572dd58e1552db060
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-04-04 (Thu, 04 Apr 2013)

  Changed paths:
    M config/Makefile.template
    M configure
    M examples/module.mk
    M models/fmssm/module.mk
    M models/fmssmn/module.mk
    M src/module.mk

  Log Message:
  -----------
  add command line option --with-tvmet-config=

patch by Alexander Voigt


  Commit: b91f74d6c182b6ba7dddd66827b2df0c8c2b7207
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/b91f74d6c182b6ba7dddd66827b2df0c8c2b7207
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-04-05 (Fri, 05 Apr 2013)

  Changed paths:
    M examples/module.mk

  Log Message:
  -----------
  Merge branch 'lattice' of /soft/users/theory/FlexibleSUSY into lattice

Conflicts:
	examples/module.mk


  Commit: 2647892c2e91f9f7c77c0d356cc097338525b62c
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/2647892c2e91f9f7c77c0d356cc097338525b62c
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-04-05 (Fri, 05 Apr 2013)

  Changed paths:
    M configure
    M examples/module.mk
    M models/fmssm/module.mk
    M models/fmssmn/module.mk
    M src/module.mk

  Log Message:
  -----------
  Merge branch 'lattice' of /soft/users/theory/FlexibleSUSY into lattice


  Commit: 35ac79b1fd09d64be26e4c72f832165aaad6afa1
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/35ac79b1fd09d64be26e4c72f832165aaad6afa1
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-04-18 (Thu, 18 Apr 2013)

  Changed paths:
    M configure
    M examples/run_mssm.cpp
    M models/mssm/mssm_two_scale_msusy_constraint.cpp
    M models/mssm/mssm_two_scale_msusy_constraint.hpp
    M models/mssm/mssm_two_scale_mz_constraint.cpp
    M models/mssm/mssm_two_scale_mz_constraint.hpp
    M models/mssm/mssm_two_scale_sugra_constraint.cpp
    M models/mssm/mssm_two_scale_sugra_constraint.hpp
    M models/sm/sm_two_scale_experimental_constraint.cpp
    M models/sm/sm_two_scale_experimental_constraint.hpp
    M models/smcw/smcw_two_scale_gut_constraint.cpp
    M models/smcw/smcw_two_scale_gut_constraint.hpp
    M src/two_scale_constraint.hpp
    M src/two_scale_solver.cpp
    M test/test_two_scale_mssm_solver.cpp
    M test/test_two_scale_running_precision.cpp
    M test/test_two_scale_sm.cpp
    M test/test_two_scale_sm_smcw_integration.cpp
    M test/test_two_scale_solver.cpp

  Log Message:
  -----------
  Merge branch 'lattice' of /soft/users/theory/FlexibleSUSY into lattice


  Commit: e1b60bddf9e639e763696d2349485225ce960a09
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/e1b60bddf9e639e763696d2349485225ce960a09
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-05-29 (Wed, 29 May 2013)

  Changed paths:
    M config/Makefile.template
    M configure
    M examples/lattice_fmssm.cpp
    M examples/lattice_fmssm_fmssmn.cpp
    A examples/lattice_numerical_fmssm.cpp
    A examples/lattice_numerical_fmssm_fmssmn.cpp
    M examples/module.mk
    M models/fmssm/fmssm_lattice_msusy_constraint.cpp
    M models/fmssm/fmssm_lattice_msusy_constraint.hpp
    M models/fmssm/fmssm_lattice_mx_constraint.cpp
    M models/fmssm/fmssm_lattice_mx_constraint.hpp
    M models/fmssm/fmssm_lattice_mz_constraint.cpp
    M models/fmssm/fmssm_lattice_mz_constraint.hpp
    A models/fmssm/fmssm_lattice_numerical_constraints.cpp
    A models/fmssm/fmssm_lattice_numerical_constraints.hpp
    A models/fmssm/fmssm_lattice_numerical_constraints_dependence.cpp.m
    A models/fmssm/fmssm_lattice_numerical_constraints_functions.f.m
    A models/fmssm/fmssm_lattice_numerical_msusy_constraint.cpp
    A models/fmssm/fmssm_lattice_numerical_msusy_constraint.hpp
    A models/fmssm/fmssm_lattice_numerical_mz_constraint.cpp
    A models/fmssm/fmssm_lattice_numerical_mz_constraint.hpp
    M models/fmssm/module.mk
    A models/fmssmn/fmssm_fmssmn_lattice_numerical_matchings.cpp
    A models/fmssmn/fmssm_fmssmn_lattice_numerical_matchings.hpp
    A models/fmssmn/fmssm_fmssmn_lattice_numerical_matchings_dependence.cpp.m
    A models/fmssmn/fmssm_fmssmn_lattice_numerical_matchings_functions.f.m
    M models/fmssmn/fmssmn_lattice_msusy_constraint.cpp
    M models/fmssmn/fmssmn_lattice_msusy_constraint.hpp
    M models/fmssmn/fmssmn_lattice_mx_constraint.cpp
    M models/fmssmn/fmssmn_lattice_mx_constraint.hpp
    M models/fmssmn/fmssmn_lattice_mz_constraint.cpp
    M models/fmssmn/fmssmn_lattice_mz_constraint.hpp
    A models/fmssmn/fmssmn_lattice_numerical_constraints.cpp
    A models/fmssmn/fmssmn_lattice_numerical_constraints.hpp
    A models/fmssmn/fmssmn_lattice_numerical_constraints_dependence.cpp.m
    A models/fmssmn/fmssmn_lattice_numerical_constraints_functions.f.m
    M models/fmssmn/module.mk
    M src/lattice_compound_constraint.hpp
    M src/lattice_constraint.cpp
    M src/lattice_constraint.hpp
    A src/lattice_numerical_constraint.cpp
    A src/lattice_numerical_constraint.hpp
    M src/lattice_solver.cpp
    M src/lattice_solver.hpp
    M src/logger.hpp
    M src/module.mk
    M src/two_scale_constraint.hpp
    A src/writeNRGE.m
    M src/writeRGE.m

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/lattice' into lattice


  Commit: d8fef43a0b381648ca3968b105a0591a51d918db
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/d8fef43a0b381648ca3968b105a0591a51d918db
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-17 (Sat, 17 Aug 2013)

  Changed paths:
    M meta/FlexibleSUSY.m

  Log Message:
  -----------
  Print my full name

There are too many J. Park's


  Commit: f10111319e807dbbad57341926c3fdb14f916797
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/f10111319e807dbbad57341926c3fdb14f916797
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-17 (Sat, 17 Aug 2013)

  Log Message:
  -----------
  meta/FlexibleSUSY.m: add missing local variable declarations


  Commit: ef4f34f9820cca2314e22f3c41ab1ec2adba0a4c
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/ef4f34f9820cca2314e22f3c41ab1ec2adba0a4c
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-17 (Sat, 17 Aug 2013)

  Changed paths:
    M meta/WriteOut.m
    M templates/MRSSM/LesHouches.in.MRSSM
    M templates/lowMSSM/LesHouches.in.lowMSSM
    A test/remove_input_blocks.awk
    M test/test_lowMSSM.sh

  Log Message:
  -----------
  SLHA compatibility fix: input blocks have name postfix "IN"


  Commit: 524829b276fba0cd2b452ab6017739d7f64d13e7
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/524829b276fba0cd2b452ab6017739d7f64d13e7
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-17 (Sat, 17 Aug 2013)

  Changed paths:
    M meta/CConversion.m

  Log Message:
  -----------
  Simplify sums with Delta[]

The new rules simplify expression of the form

   sum[j1, 1, 3, Delta[gO1, 3 + j1] ZD[gI1, 3 + j1]]

to

   ThetaStep[4, gO1] ThetaStep[gO1, 6] ZD[gI1, gO1]

However, expressions of the form

   sum[j1, 1, 3, Delta[gO1, 3 + j1] ZD[gI1, j1]]

are not yet simplified.  Here one could use the identity

   Delta[k,i+n] == Delta[k-n,i]

But one has to be careful here, because applying this identity
would lead to expressions of the form

   ThetaStep[-3 + gO1, 3] ZD[gI1, -3 + gO1]

If then ThetaStep[-3 + gO1, 3] is converted to an if() statement,
one has to make sure that gO1 is of type int (and not unsigned)!


  Commit: c51cd9f4847d23920c77c463db42e7469f538f86
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/c51cd9f4847d23920c77c463db42e7469f538f86
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-18 (Sun, 18 Aug 2013)

  Log Message:
  -----------
  SLHA compatibility fix: input blocks have name postfix "IN"


  Commit: 245de590be6025d22854247fbe85dd6341b48e4b
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/245de590be6025d22854247fbe85dd6341b48e4b
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-18 (Sun, 18 Aug 2013)

  Log Message:
  -----------
  Simplify sums with Delta[]

The new rules simplify expression of the form

   sum[j1, 1, 3, Delta[gO1, 3 + j1] ZD[gI1, 3 + j1]]

to

   ThetaStep[4, gO1] ThetaStep[gO1, 6] ZD[gI1, gO1]

However, expressions of the form

   sum[j1, 1, 3, Delta[gO1, 3 + j1] ZD[gI1, j1]]

are not yet simplified.  Here one could use the identity

   Delta[k,i+n] == Delta[k-n,i]

But one has to be careful here, because applying this identity
would lead to expressions of the form

   ThetaStep[-3 + gO1, 3] ZD[gI1, -3 + gO1]

If then ThetaStep[-3 + gO1, 3] is converted to an if() statement,
one has to make sure that gO1 is of type int (and not unsigned)!


  Commit: 8d6a9f363a831dc123eccdda449dd425ad19a11b
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/8d6a9f363a831dc123eccdda449dd425ad19a11b
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-18 (Sun, 18 Aug 2013)

  Changed paths:
    M meta/LoopMasses.m
    M src/wrappers.cpp
    M src/wrappers.hpp

  Log Message:
  -----------
  calculate only upper-right self-energy matrix for scalars


  Commit: ad89380a9f2a171f6c4ee10b450436f9a7709354
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/ad89380a9f2a171f6c4ee10b450436f9a7709354
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-18 (Sun, 18 Aug 2013)

  Changed paths:
    M meta/CConversion.m

  Log Message:
  -----------
  Remove algebraic simplification because one gains nothing.

Furthermore it is rather dangerous, becaus I don't know which side-
effects can happen.


  Commit: f9d0ac7ab9df32ed1a520322ba99612a07da33b7
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/f9d0ac7ab9df32ed1a520322ba99612a07da33b7
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-21 (Wed, 21 Aug 2013)

  Log Message:
  -----------
  SLHA compatibility fix: input blocks have name postfix "IN"


  Commit: f391f803a6b6fdff719dfc7acf142f057707c8fa
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/f391f803a6b6fdff719dfc7acf142f057707c8fa
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-21 (Wed, 21 Aug 2013)

  Changed paths:
    M meta/CConversion.m

  Log Message:
  -----------
  Simplify sums with Delta[]

The new rules simplify expression of the form

   sum[j1, 1, 3, Delta[gO1, 3 + j1] ZD[gI1, 3 + j1]]

to

   ThetaStep[4, gO1] ThetaStep[gO1, 6] ZD[gI1, gO1]

However, expressions of the form

   sum[j1, 1, 3, Delta[gO1, 3 + j1] ZD[gI1, j1]]

are not yet simplified.  Here one could use the identity

   Delta[k,i+n] == Delta[k-n,i]

But one has to be careful here, because applying this identity
would lead to expressions of the form

   ThetaStep[-3 + gO1, 3] ZD[gI1, -3 + gO1]

If then ThetaStep[-3 + gO1, 3] is converted to an if() statement,
one has to make sure that gO1 is of type int (and not unsigned)!


  Commit: 18893f98cf7a592510d0b53f462d61647b5e42c1
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/18893f98cf7a592510d0b53f462d61647b5e42c1
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-21 (Wed, 21 Aug 2013)

  Log Message:
  -----------
  calculate only upper-right self-energy matrix for scalars


  Commit: 72ddef929d620dc0b9f0a6bdd252285ca1df3568
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/72ddef929d620dc0b9f0a6bdd252285ca1df3568
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-21 (Wed, 21 Aug 2013)

  Changed paths:
    M meta/CConversion.m

  Log Message:
  -----------
  Remove algebraic simplification because one gains nothing.

Furthermore it is rather dangerous, becaus I don't know which side-
effects can happen.


  Commit: d50ceb6ca8368ccafa185f70a47295d5270fdc28
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/d50ceb6ca8368ccafa185f70a47295d5270fdc28
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-21 (Wed, 21 Aug 2013)

  Changed paths:
    M configure

  Log Message:
  -----------
  version 0.3


  Commit: 0a7cfd2ee0f4ee5c2d0a931cecfac8fae6a71299
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/0a7cfd2ee0f4ee5c2d0a931cecfac8fae6a71299
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-21 (Wed, 21 Aug 2013)

  Changed paths:
    A meta/IndexStructure.m

  Log Message:
  -----------
  meta/IndexStructure.m: analysis of index structure of couplings


  Commit: 2a2a7395a36db339587c456a058d4f3a3f3943a8
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/2a2a7395a36db339587c456a058d4f3a3f3943a8
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-23 (Fri, 23 Aug 2013)

  Changed paths:
    M src/stopwatch.cpp
    M src/stopwatch.hpp
    M test/module.mk
    A test/slha_generic.slha2
    A test/test_benchmark.cpp

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 8bf4371ff7730f8332a67dbf22bb58356c9b333e
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/8bf4371ff7730f8332a67dbf22bb58356c9b333e
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-23 (Fri, 23 Aug 2013)

  Changed paths:
    M meta/Constraint.m
    M src/stopwatch.cpp
    M src/stopwatch.hpp
    M test/slha_generic.slha2
    M test/test_Constraint.m

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: ed290d498ea6778b617a5dac273f860ed2b88070
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/ed290d498ea6778b617a5dac273f860ed2b88070
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-23 (Fri, 23 Aug 2013)

  Changed paths:
    M meta/Constraint.m
    M test/test_Constraint.m

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 9cf0a35e03660448f34a6f5d4748f49a2886febb
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/9cf0a35e03660448f34a6f5d4748f49a2886febb
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-23 (Fri, 23 Aug 2013)

  Changed paths:
    M meta/IndexStructure.m

  Log Message:
  -----------
  meta/IndexStructure.m: make pattern names local symbols


  Commit: 51d305f507a1d8efb85078e7935146f03cd1af61
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/51d305f507a1d8efb85078e7935146f03cd1af61
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-23 (Fri, 23 Aug 2013)

  Changed paths:
    M meta/TestSuite.m

  Log Message:
  -----------
  meta/TestSuite.m: add TestMatch[]


  Commit: 9865a9805571ee8d4ec24b57084b90d743c1dcff
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/9865a9805571ee8d4ec24b57084b90d743c1dcff
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-24 (Sat, 24 Aug 2013)

  Changed paths:
    A meta/Parametrization.m
    M test/module.mk
    A test/test_Parametrization.m

  Log Message:
  -----------
  meta/Parametrization.m: parametrization of indexed couplings

To use Newton's method, one needs to differentiate constraints with
respect to the Wilson coefficients.  Therefore, a single parameter
that one refers to in multiple different ways must be identified:
e.g. the real parts of mq2[1,2] and mq2[2,1] are really identical
parameters.  The added functions are intended for parametrizing an
indexed coupling in terms of a set of independent real variables.  For
instance, a 2 X 2 hermitian matrix is parametrized as

{{Re[mq2[1,1]], -I Im[mq2[2,1]] + Re[mq2[2,1]]},
 { I Im[mq2[2,1]] + Re[mq2[2,1]], Re[mq2[2,2]]}}


  Commit: 769d4c5c183bc7f2900eb826dbe730e51e102586
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/769d4c5c183bc7f2900eb826dbe730e51e102586
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-24 (Sat, 24 Aug 2013)

  Changed paths:
    M configure
    M meta/FlexibleSUSY.m
    M test/test_Constraint.m

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 8340af23207bac9ad1d3669e9c640ec92d11b0b9
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/8340af23207bac9ad1d3669e9c640ec92d11b0b9
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-24 (Sat, 24 Aug 2013)

  Changed paths:
    M configure
    M src/command_line_options.cpp
    M src/slha_io.cpp
    M src/slha_io.hpp
    M templates/run.cpp.in
    M templates/run_low_scale_model.cpp.in
    M test/test_benchmark.cpp

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 29f830d31cef84262d60a9acb37f06c72460b65d
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/29f830d31cef84262d60a9acb37f06c72460b65d
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-25 (Sun, 25 Aug 2013)

  Changed paths:
    M configure

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: fc7a3595b4f02caae28bdcf09687405fd1810113
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/fc7a3595b4f02caae28bdcf09687405fd1810113
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-25 (Sun, 25 Aug 2013)

  Changed paths:
    M meta/FlexibleSUSY.m

  Log Message:
  -----------
  meta/FlexibleSUSY.m: add coding info for emacs


  Commit: 73fac60feb6783612cb489217d12425a577b9242
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/73fac60feb6783612cb489217d12425a577b9242
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-26 (Mon, 26 Aug 2013)

  Changed paths:
    M meta/IndexStructure.m
    M meta/Parametrization.m
    M test/test_Parametrization.m

  Log Message:
  -----------
  meta/IndexStructure.m: duplicate Susyno`LieGroups`conj

meta/TreeMasses.m binds the following rule to Susyno`LieGroups`conj:

    Susyno`LieGroups`conj[m_[a_,b_]] := m[b,a] /;
	MemberQ[SARAH`ListSoftBreakingScalarMasses, m];

which breaks HermiticityConditions[].  To circumvent this conflict,
IndexStructure.m now defines a private complex conjugation symbol.


  Commit: 2f1fda0ca84680313c2bbcd74d4628ad4a17d1d8
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/2f1fda0ca84680313c2bbcd74d4628ad4a17d1d8
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-26 (Mon, 26 Aug 2013)

  Changed paths:
    M meta/Parametrization.m

  Log Message:
  -----------
  Simplify ReduceParameters[]


  Commit: 72eb57d3da1870fda6978f6a77b94eaf3b09e551
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/72eb57d3da1870fda6978f6a77b94eaf3b09e551
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-26 (Mon, 26 Aug 2013)

  Changed paths:
    M meta/IndexStructure.m

  Log Message:
  -----------
  meta/IndexStructure.m: check if a pattern is a pattern

EnforceCommonIndices[couplingPattern,...] shall do something only if
couplingPattern has the form head[pattern] where pattern contains _.


  Commit: 0fb2a3260608964d08f799cde55a88bd5109d77e
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/0fb2a3260608964d08f799cde55a88bd5109d77e
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-26 (Mon, 26 Aug 2013)

  Changed paths:
    M meta/Parametrization.m

  Log Message:
  -----------
  meta/Parametrization.m: check more strictly for coupling indices

Before this change, ParametrizeSusyBreakingCoupling[] regarded
B[\[Mu]] as an indexed coupling.


  Commit: 7b02313a70bb1ca9be8e2f9fa2c27e07ca5cac8f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/7b02313a70bb1ca9be8e2f9fa2c27e07ca5cac8f
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-26 (Mon, 26 Aug 2013)

  Changed paths:
    M test/test_Parametrization.m

  Log Message:
  -----------
  Add more tests of Parametrization.m


  Commit: bdeceaee46167d031e2d284c3b310afb66bb8228
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/bdeceaee46167d031e2d284c3b310afb66bb8228
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-26 (Mon, 26 Aug 2013)

  Changed paths:
    M meta/FlexibleSUSY.m
    M meta/TreeMasses.m
    A templates/low_scale_spectrum_generator.hpp.in
    M templates/module.mk
    M templates/module.mk.in
    M templates/run.cpp.in
    R templates/run_low_scale_model.cpp.in
    A templates/spectrum_generator.hpp.in

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: dd823f2d1da81d8ac950be3052b35232446b1ecb
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/dd823f2d1da81d8ac950be3052b35232446b1ecb
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-26 (Mon, 26 Aug 2013)

  Changed paths:
    M meta/TreeMasses.m

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 5299b606ac93cf9062646caec54643950f09aa95
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/5299b606ac93cf9062646caec54643950f09aa95
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-26 (Mon, 26 Aug 2013)

  Changed paths:
    M meta/IndexStructure.m

  Log Message:
  -----------
  meta/IndexStructure.m: remove removal of hermiticity rule

TreeMasses.m does not define the rule any more as of commit
be98ae8c776fef7be8902dda2c18503219203d25


  Commit: 8f6430702b6f7c273c6a91162e54c835cb6ae41f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/8f6430702b6f7c273c6a91162e54c835cb6ae41f
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-27 (Tue, 27 Aug 2013)

  Changed paths:
    M meta/IndexStructure.m

  Log Message:
  -----------
  Avoid using a name ending in $

http://stackoverflow.com/questions/5957704/what-is-dollar-sign-used-for-internally


  Commit: 24bfb0a941a1e8f7a95784527ba2713e5e2d5d7f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/24bfb0a941a1e8f7a95784527ba2713e5e2d5d7f
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-27 (Tue, 27 Aug 2013)

  Changed paths:
    M meta/Parametrization.m

  Log Message:
  -----------
  meta/Parametrization.m: add more functions


  Commit: 93c3483e4c70083375ee486d72ca5bb6100b9cd9
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/93c3483e4c70083375ee486d72ca5bb6100b9cd9
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-29 (Thu, 29 Aug 2013)

  Changed paths:
    R meta/IndexStructure.m
    M meta/Parametrization.m
    M test/test_Parametrization.m

  Log Message:
  -----------
  Combine meta/{IndexStructure,Parametrization}.m


  Commit: 17e3e669a5c8ad59efa296a8c6f056121aa9479b
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/17e3e669a5c8ad59efa296a8c6f056121aa9479b
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-08-30 (Fri, 30 Aug 2013)

  Changed paths:
    A meta/Lattice.m
    M meta/Parametrization.m
    M test/module.mk
    A test/test_Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: expansion of beta functions

ParametrizeBetaFunctions[] expands the 1-loop and the 2-loop beta
functions in terms of the real and the imaginary parts of the model
parameters.  It also expands the traces generated by SARAH.


  Commit: b445b2c8ccaa24ae40295f70b9afae80e0ed0612
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/b445b2c8ccaa24ae40295f70b9afae80e0ed0612
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-30 (Fri, 30 Aug 2013)

  Changed paths:
    M templates/MRSSM/LesHouches.in.MRSSM
    M templates/MSSM/LesHouches.in.MSSM
    M templates/NMSSM/LesHouches.in.NMSSM
    M templates/lowMSSM/LesHouches.in.lowMSSM

  Log Message:
  -----------
  remove comments in SLHA files because they will appear in the output


  Commit: 1cb91f707571c4bdeb12d9986adbab5d7b3a890c
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/1cb91f707571c4bdeb12d9986adbab5d7b3a890c
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-30 (Fri, 30 Aug 2013)

  Changed paths:
    M models/smssm/twoloophiggs.f

  Log Message:
  -----------
  merge bugfix from upstream


  Commit: fb3d2db9c13721d933f6939251cfa9342e9e59f9
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/fb3d2db9c13721d933f6939251cfa9342e9e59f9
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-30 (Fri, 30 Aug 2013)

  Changed paths:
    M src/utils.h

  Log Message:
  -----------
  merge utils.h from upstream/nmssm2


  Commit: b0bab8c2e68ab1de96e0e7b9e6399928255b344b
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/b0bab8c2e68ab1de96e0e7b9e6399928255b344b
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-30 (Fri, 30 Aug 2013)

  Changed paths:
    M src/linalg.cpp
    M src/linalg.h

  Log Message:
  -----------
  remove unused functions


  Commit: 4a7cedb91250443623950544fb33bec7b86ac4a6
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/4a7cedb91250443623950544fb33bec7b86ac4a6
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-30 (Fri, 30 Aug 2013)

  Changed paths:
    M src/linalg.cpp
    M src/linalg.h

  Log Message:
  -----------
  merge helper function from upstream/nmssm2


  Commit: 4c0f4a8914974091a54e3e00206971d5398aefef
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/4c0f4a8914974091a54e3e00206971d5398aefef
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-30 (Fri, 30 Aug 2013)

  Changed paths:
    M src/linalg.cpp

  Log Message:
  -----------
  merge optimizations from upstream/nmssm2


  Commit: e09fbd1fc3daf6ff4ffc2e75b5281fb21e650c42
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/e09fbd1fc3daf6ff4ffc2e75b5281fb21e650c42
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-30 (Fri, 30 Aug 2013)

  Changed paths:
    M src/betafunction.cpp
    M src/def.cpp
    M src/def.h
    M src/numerics.cpp
    M test/test_MSSM_initial_guesser.cpp

  Log Message:
  -----------
  merge def.{h,cpp} from upstream/nmssm2


  Commit: 6e6b13521980d3069b0bd37203038cb65f942cec
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/6e6b13521980d3069b0bd37203038cb65f942cec
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-08-30 (Fri, 30 Aug 2013)

  Changed paths:
    M templates/low_scale_spectrum_generator.hpp.in
    M templates/spectrum_generator.hpp.in

  Log Message:
  -----------
  decrease the default precision to 10^-4 which is the default in Softsusy


  Commit: e81fab9abf1ac22b254171c016016ef9fccb10cc
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/e81fab9abf1ac22b254171c016016ef9fccb10cc
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-01 (Sun, 01 Sep 2013)

  Changed paths:
    M test/test_Lattice.m

  Log Message:
  -----------
  test/test_Lattice.m: fix context


  Commit: 7af0e3ca3e45cf8ad55391b654ac6ae4135dea33
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/7af0e3ca3e45cf8ad55391b654ac6ae4135dea33
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M models/fmssm/fmssm_lattice.cpp
    M models/fmssm/fmssm_lattice.hpp
    M models/fmssmn/fmssmn_lattice.cpp
    M models/fmssmn/fmssmn_lattice.hpp
    M src/lattice_constraint.cpp
    M src/lattice_constraint.hpp
    M src/lattice_model.hpp
    M src/lattice_solver.cpp
    M src/lattice_solver.hpp

  Log Message:
  -----------
  Change interface of lattice beta functions

ParWilson::dx() now calculates all beta functions in a single call and
ParWilson::ddx() calculates all derivatives of all beta functions.
This consumes more buffer memory but reduces calls to the common trace
functions.


  Commit: f410b6cbcbc93a7af69a75fbc49e9a5e3f28c732
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/f410b6cbcbc93a7af69a75fbc49e9a5e3f28c732
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M meta/Lattice.m
    M templates/lattice_model.cpp.in
    M templates/lattice_model.hpp.in
    M templates/module.mk.in
    M test/test_Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: generated C++ code compiles


  Commit: 760ff4461da3b75704b9c5d37ee4b18ac79a858e
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/760ff4461da3b75704b9c5d37ee4b18ac79a858e
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M templates/utilities.hpp.in

  Log Message:
  -----------
  add missing include (needed for ToValarray())


  Commit: 3dcb4cc0eb68796222439b14e67ae31b99cc1d8a
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/3dcb4cc0eb68796222439b14e67ae31b99cc1d8a
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M templates/run.cpp.in

  Log Message:
  -----------
  help the user on how to use the helper functions for spectrum plotting


  Commit: 20b3df9f6357a2a3a51a19705987e748cd65beb4
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/20b3df9f6357a2a3a51a19705987e748cd65beb4
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    A models/smssm/mssmUtils.cpp
    A models/smssm/mssmUtils.h
    M models/smssm/susy.cpp

  Log Message:
  -----------
  merge susy.h/cpp from upstream nmssm2

The g4 terms for the Higgs anomalous dimesions are currently disabled
until SARAH has implemented them.


  Commit: 348ca2ced7f8a5db4dc5ecba8a3329ae6746049a
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/348ca2ced7f8a5db4dc5ecba8a3329ae6746049a
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M meta/FlexibleSUSY.m
    M meta/LoopMasses.m
    M templates/two_scale_model.cpp.in
    M test/module.mk

  Log Message:
  -----------
  let the user define which particles to calculate in a separate thread


  Commit: 074ea3e1949cbd3a3075c7e4df0891b045370303
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/074ea3e1949cbd3a3075c7e4df0891b045370303
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M templates/start.m.in

  Log Message:
  -----------
  show the user how to use the Thread option


  Commit: eccf699758e9d7262aa80e986343697de7836964
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/eccf699758e9d7262aa80e986343697de7836964
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M meta/LoopMasses.m

  Log Message:
  -----------
  Bugfix: do not join the thread if no threads available


  Commit: 40126201500b78862191e347beb5f7d06d1bf2b1
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/40126201500b78862191e347beb5f7d06d1bf2b1
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M meta/FlexibleSUSY.m
    M templates/start.m.in

  Log Message:
  -----------
  rename new user option


  Commit: e7d7a716b918877674a9c385bf81a58c28b447dd
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/e7d7a716b918877674a9c385bf81a58c28b447dd
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M meta/LoopMasses.m

  Log Message:
  -----------
  rename variable


  Commit: 2fc15e60b3423d5c61cf769e3f35698ae6c3cda3
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/2fc15e60b3423d5c61cf769e3f35698ae6c3cda3
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M meta/LoopMasses.m

  Log Message:
  -----------
  rename function


  Commit: 57962707e44cc14eb6a13cb0f22160820b1ad7bc
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/57962707e44cc14eb6a13cb0f22160820b1ad7bc
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M meta/LoopMasses.m

  Log Message:
  -----------
  rename variable


  Commit: 28ab4a3b23060b07262ffa420485f9a447d06e26
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/28ab4a3b23060b07262ffa420485f9a447d06e26
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M meta/LoopMasses.m
    M templates/two_scale_model.cpp.in

  Log Message:
  -----------
  use std::thread instead of boost::thread


  Commit: cff7c299163fc2d4041330a2016f32e522501556
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/cff7c299163fc2d4041330a2016f32e522501556
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M meta/LoopMasses.m
    M templates/two_scale_model.cpp.in
    M templates/two_scale_model.hpp.in

  Log Message:
  -----------
  catch thread exceptions


  Commit: d44014676237bc407f15c32bf01fdb3b0efd1c8d
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/d44014676237bc407f15c32bf01fdb3b0efd1c8d
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M meta/LoopMasses.m
    M templates/two_scale_model.hpp.in

  Log Message:
  -----------
  use one thread for each pole mass to avoid usage of the user's brain


  Commit: 0c301da7a8cc3afc19f557d695d4a569a32afdaf
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/0c301da7a8cc3afc19f557d695d4a569a32afdaf
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M meta/FlexibleSUSY.m
    M meta/LoopMasses.m
    M templates/start.m.in

  Log Message:
  -----------
  let the user decide wether to enable threads or not


  Commit: 63a1cdf2a6277764a4d18cb6dac19e8c2ecde167
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/63a1cdf2a6277764a4d18cb6dac19e8c2ecde167
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M meta/FlexibleSUSY.m
    M meta/LoopMasses.m

  Log Message:
  -----------
  rename functions to better express what they do


  Commit: 6135575e3b2038fadff39302924d08ea5f5e45a6
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/6135575e3b2038fadff39302924d08ea5f5e45a6
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-03 (Tue, 03 Sep 2013)

  Changed paths:
    M src/lattice_constraint.cpp

  Log Message:
  -----------
  Suppress [-Wsign-compare] warnings


  Commit: db55f174fef161a01b155e2845c9c186611fe266
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/db55f174fef161a01b155e2845c9c186611fe266
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-04 (Wed, 04 Sep 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: do not emit C Code for constant-valued functions


  Commit: 4f5f2922883ae2565bd2d547bcbf974fb3c56f73
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/4f5f2922883ae2565bd2d547bcbf974fb3c56f73
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-04 (Wed, 04 Sep 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: a minor clean-up


  Commit: 1407f01c324be81c0d34a13e3a2cd44c096567fb
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/1407f01c324be81c0d34a13e3a2cd44c096567fb
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-05 (Thu, 05 Sep 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: avoid long replacement rule lists

ReplaceAll[long exp, long rule list] takes a long time, in particular
when no rule actually applies.  Rewrite code instead using Set (=).


  Commit: 285de864beb249e9f65df38b9efcd1926187c1c4
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/285de864beb249e9f65df38b9efcd1926187c1c4
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-05 (Thu, 05 Sep 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: eliminate a long replacement rule list

When translating a parameter such as Re[Ye[3, 3]] into an C-enum
element, a list of replacement rules was used.  In this commit, the
function ToEnumSymbol[] is defined which serves as the parameter
lookup table.  This could make the translation process hopefully
faster.


  Commit: 65e87604db60190f830afd0ed49652984b08894f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/65e87604db60190f830afd0ed49652984b08894f
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-06 (Fri, 06 Sep 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: fix a bug in handling trace abbreviations

ParametrizeTraceAbbrRule[traces_Alternatives -> abbr_] wrongly kept
only the first alternative.


  Commit: 6621237dc5eaf2f9bcb0f733140b334891fb8df6
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/6621237dc5eaf2f9bcb0f733140b334891fb8df6
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-08 (Sun, 08 Sep 2013)

  Changed paths:
    M meta/Lattice.m
    M templates/lattice_model.hpp.in

  Log Message:
  -----------
  meta/Lattice.m: split long C source file for beta functions

Otherwise, gcc chokes on (derivatives of) 2-loop beta functions for
the MSSM with full flavour mixing and CP violation.


  Commit: 91dd905d2d6dbcc292bbbd16b9499836dc584df3
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/91dd905d2d6dbcc292bbbd16b9499836dc584df3
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-09 (Mon, 09 Sep 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: simplify translation to CForm string

RValueToCFormString[] takes a long time since it tries many
transformation rules that do not apply to expressions in the lattice
method.


  Commit: 18d3a381ae71868fde98eb7f31656f8424317989
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/18d3a381ae71868fde98eb7f31656f8424317989
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-09 (Mon, 09 Sep 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: pad zeros on split file numbers

so that ls displays the files in order.


  Commit: 9edbafcbd12409b03f62312de2d57bfa80a5683d
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/9edbafcbd12409b03f62312de2d57bfa80a5683d
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-09 (Mon, 09 Sep 2013)

  Changed paths:
    M meta/Lattice.m
    M test/test_Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: do not touch formatting rules of Re[] and Im[]

Modification of the formatting rules of Re[] and Im[] breaks two-scale
method.


  Commit: f67057a9b2b765c1f89b5a22ba92d7be5e6cbcea
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/f67057a9b2b765c1f89b5a22ba92d7be5e6cbcea
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-11 (Wed, 11 Sep 2013)

  Changed paths:
    M meta/FlexibleSUSY.m
    M meta/Lattice.m
    A meta/Makefile.m
    M meta/Parametrization.m
    M meta/module.mk
    A templates/lattice.mk.in
    A templates/lattice_info.hpp.in
    A templates/lattice_model_betafunctions.cpp.in
    M templates/module.mk
    M templates/module.mk.in

  Log Message:
  -----------
  Integrate Lattice code into MakeFlexibleSUSY[]


  Commit: 1ff355256407e7949f85b2bd7d4e713cbb8392b7
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/1ff355256407e7949f85b2bd7d4e713cbb8392b7
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-11 (Wed, 11 Sep 2013)

  Changed paths:
    M meta/BetaFunction.m
    M meta/CConversion.m
    M meta/EWSB.m
    M meta/FlexibleSUSY.m
    M meta/Parameters.m
    M meta/SelfEnergies.m
    M meta/WriteOut.m
    M src/module.mk
    A src/scan.cpp
    A src/scan.hpp
    M src/wrappers.hpp
    M templates/FlexibleSUSY.m.in
    M templates/MSSM/FlexibleSUSY.m.in
    M templates/MSSM/LesHouches.in.MSSM
    M templates/minMSSM/FlexibleSUSY.m.in
    M templates/module.mk
    M templates/module.mk.in
    M templates/rootMSSM/FlexibleSUSY.m.in
    A templates/scan.cpp.in
    M templates/spectrum_generator.hpp.in
    M templates/two_scale_high_scale_constraint.cpp.in
    M templates/two_scale_initial_guesser.cpp.in
    M templates/two_scale_initial_guesser.hpp.in

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: dd7ce3105fbde82d27b9abac989e2676ec9347b3
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/dd7ce3105fbde82d27b9abac989e2676ec9347b3
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-11 (Wed, 11 Sep 2013)

  Changed paths:
    M meta/CConversion.m
    M templates/E6SSM/FlexibleSUSY.m.in
    M test/test_CConversion.m

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 2974b721ada95d68bf1e390b84610fa27dfcf0fc
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/2974b721ada95d68bf1e390b84610fa27dfcf0fc
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-12 (Thu, 12 Sep 2013)

  Changed paths:
    M meta/FlexibleSUSY.m
    M meta/Parametrization.m

  Log Message:
  -----------
  Adapt lattice code to new parameter naming scheme

Test whether an object is a coupling head or not by looking up the
CouplingDimensions table.  Due to the commit
d1b0b9a5cb54b9997cf44a78ce97ef4a35679d0c, one can no longer assume
that an object of the form _[__] is an indexed coupling.  A counter
example is B[\[Mu]].


  Commit: 18d7d888e83f8839f848c6864b606e6563f7c60d
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/18d7d888e83f8839f848c6864b606e6563f7c60d
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-12 (Thu, 12 Sep 2013)

  Changed paths:
    M .gitignore
    M README
    A config/Makefile.in
    R config/Makefile.template
    A config/config.h.in
    A config/flexiblesusy-config.in
    M config/module.mk
    M configure
    A createmodel
    M doc/Doxyfile
    M doc/module.mk
    M examples/lattice_fmssm.cpp
    M examples/lattice_fmssm_fmssmn.cpp
    M examples/lattice_numerical_fmssm.cpp
    M examples/lattice_numerical_fmssm_fmssmn.cpp
    M examples/module.mk
    R examples/run_mssm.cpp
    A examples/run_smssm.cpp
    A examples/run_softpoint.cpp
    A examples/run_softpoint.h
    A examples/run_softsusy.cpp
    R examples/softsusy.cpp
    A examples/switch_MSSM.cpp
    A legacy/module.mk
    A legacy/rk_legacy.cpp
    A legacy/rk_legacy.hpp
    A meta/AnomalousDimension.m
    A meta/BetaFunction.m
    A meta/CConversion.m
    A meta/Constraint.m
    A meta/ConvergenceTester.m
    A meta/EWSB.m
    A meta/FlexibleSUSY.m
    A meta/Format.m
    A meta/Lattice.m
    A meta/LoopMasses.m
    A meta/Makefile.m
    A meta/Parameters.m
    A meta/Parametrization.m
    A meta/Phases.m
    A meta/SelfEnergies.m
    A meta/TestSuite.m
    A meta/TextFormatting.m
    A meta/ThresholdCorrections.m
    A meta/Traces.m
    A meta/TreeMasses.m
    A meta/TwoLoop.m
    A meta/WriteOut.m
    A meta/module.mk
    A meta/writeNRGE.m
    A meta/writeRGE.m
    M models/fmssm/fmssm.hpp
    M models/fmssm/fmssm_lattice.cpp
    M models/fmssm/fmssm_lattice.hpp
    M models/fmssm/fmssm_lattice_constraints.f.m
    M models/fmssm/fmssm_lattice_constraints.hpp
    M models/fmssm/fmssm_lattice_defs.m
    M models/fmssm/fmssm_lattice_msusy_constraint.cpp
    M models/fmssm/fmssm_lattice_msusy_constraint.hpp
    M models/fmssm/fmssm_lattice_mx_constraint.cpp
    M models/fmssm/fmssm_lattice_mx_constraint.hpp
    M models/fmssm/fmssm_lattice_mz_constraint.cpp
    M models/fmssm/fmssm_lattice_mz_constraint.hpp
    M models/fmssm/fmssm_lattice_numerical_constraints.cpp
    M models/fmssm/fmssm_lattice_numerical_constraints.hpp
    M models/fmssm/fmssm_lattice_numerical_constraints_dependence.cpp.m
    M models/fmssm/fmssm_lattice_numerical_constraints_functions.f.m
    M models/fmssm/fmssm_lattice_numerical_msusy_constraint.cpp
    M models/fmssm/fmssm_lattice_numerical_msusy_constraint.hpp
    M models/fmssm/fmssm_lattice_numerical_mz_constraint.cpp
    M models/fmssm/fmssm_lattice_numerical_mz_constraint.hpp
    M models/fmssm/fmssm_oneloop.cpp
    M models/fmssm/fmssm_oneloop.hpp
    M models/fmssm/module.mk
    M models/fmssmn/fmssm_fmssmn_lattice_matchings.hpp
    M models/fmssmn/fmssm_fmssmn_lattice_numerical_matchings.cpp
    M models/fmssmn/fmssm_fmssmn_lattice_numerical_matchings.hpp
    M models/fmssmn/fmssm_fmssmn_lattice_numerical_matchings_dependence.cpp.m
    M models/fmssmn/fmssm_fmssmn_lattice_numerical_matchings_functions.f.m
    M models/fmssmn/fmssmn.hpp
    M models/fmssmn/fmssmn_lattice.cpp
    M models/fmssmn/fmssmn_lattice.hpp
    M models/fmssmn/fmssmn_lattice_constraints.f.m
    M models/fmssmn/fmssmn_lattice_constraints.hpp
    M models/fmssmn/fmssmn_lattice_defs.m
    M models/fmssmn/fmssmn_lattice_msusy_constraint.cpp
    M models/fmssmn/fmssmn_lattice_msusy_constraint.hpp
    M models/fmssmn/fmssmn_lattice_mx_constraint.cpp
    M models/fmssmn/fmssmn_lattice_mx_constraint.hpp
    M models/fmssmn/fmssmn_lattice_mz_constraint.cpp
    M models/fmssmn/fmssmn_lattice_mz_constraint.hpp
    M models/fmssmn/fmssmn_lattice_numerical_constraints.cpp
    M models/fmssmn/fmssmn_lattice_numerical_constraints.hpp
    M models/fmssmn/fmssmn_lattice_numerical_constraints_dependence.cpp.m
    M models/fmssmn/fmssmn_lattice_numerical_constraints_functions.f.m
    M models/fmssmn/module.mk
    R models/mssm/module.mk
    R models/mssm/mssm.hpp
    R models/mssm/mssm_parameter_point.hpp
    R models/mssm/mssm_solver.h
    R models/mssm/mssm_two_scale.cpp
    R models/mssm/mssm_two_scale.hpp
    R models/mssm/mssm_two_scale_convergence_tester.cpp
    R models/mssm/mssm_two_scale_convergence_tester.hpp
    R models/mssm/mssm_two_scale_initial_guesser.cpp
    R models/mssm/mssm_two_scale_initial_guesser.hpp
    R models/mssm/mssm_two_scale_msusy_constraint.cpp
    R models/mssm/mssm_two_scale_msusy_constraint.hpp
    R models/mssm/mssm_two_scale_mz_constraint.cpp
    R models/mssm/mssm_two_scale_mz_constraint.hpp
    R models/mssm/mssm_two_scale_sugra_constraint.cpp
    R models/mssm/mssm_two_scale_sugra_constraint.hpp
    R models/mssm/physpars.cpp
    R models/mssm/physpars.h
    R models/mssm/softpars.cpp
    R models/mssm/softpars.h
    R models/mssm/softsusy.cpp
    R models/mssm/softsusy.h
    R models/mssm/susy.cpp
    R models/mssm/susy.h
    R models/mssm/twoloophiggs.f
    R models/mssm/twoloophiggs.h
    M models/sm/sm.hpp
    M models/sm/sm_two_scale.cpp
    M models/sm/sm_two_scale.hpp
    M models/sm/sm_two_scale_convergence_tester.cpp
    M models/sm/sm_two_scale_convergence_tester.hpp
    M models/sm/sm_two_scale_experimental_constraint.cpp
    M models/sm/sm_two_scale_experimental_constraint.hpp
    M models/smcw/smcw.hpp
    M models/smcw/smcw_two_scale.cpp
    M models/smcw/smcw_two_scale.hpp
    M models/smcw/smcw_two_scale_convergence_tester.cpp
    M models/smcw/smcw_two_scale_convergence_tester.hpp
    M models/smcw/smcw_two_scale_gut_constraint.cpp
    M models/smcw/smcw_two_scale_gut_constraint.hpp
    A models/smssm/module.mk
    A models/smssm/mssm.hpp
    A models/smssm/mssmUtils.cpp
    A models/smssm/mssmUtils.h
    A models/smssm/mssm_parameter_point.hpp
    A models/smssm/mssm_solver.h
    A models/smssm/mssm_two_scale.cpp
    A models/smssm/mssm_two_scale.hpp
    A models/smssm/mssm_two_scale_convergence_tester.cpp
    A models/smssm/mssm_two_scale_convergence_tester.hpp
    A models/smssm/mssm_two_scale_initial_guesser.cpp
    A models/smssm/mssm_two_scale_initial_guesser.hpp
    A models/smssm/mssm_two_scale_low_scale_constraint.cpp
    A models/smssm/mssm_two_scale_low_scale_constraint.hpp
    A models/smssm/mssm_two_scale_sugra_constraint.cpp
    A models/smssm/mssm_two_scale_sugra_constraint.hpp
    A models/smssm/mssm_two_scale_susy_scale_constraint.cpp
    A models/smssm/mssm_two_scale_susy_scale_constraint.hpp
    A models/smssm/physpars.cpp
    A models/smssm/physpars.h
    A models/smssm/softpars.cpp
    A models/smssm/softpars.h
    A models/smssm/softsusy.cpp
    A models/smssm/softsusy.h
    A models/smssm/susy.cpp
    A models/smssm/susy.h
    A models/smssm/twoloophiggs.f
    A models/smssm/twoloophiggs.h
    A slhaea/module.mk
    A slhaea/slhaea.h
    R src/Format.m
    M src/SM.cpp
    M src/SM.hpp
    A src/betafunction.cpp
    A src/betafunction.hpp
    A src/command_line_options.cpp
    A src/command_line_options.hpp
    M src/compound_constraint.hpp
    M src/constraint.hpp
    M src/consts.hpp
    M src/convergence_tester.hpp
    R src/coupling_monitor.cpp
    M src/coupling_monitor.hpp
    M src/def.cpp
    M src/def.h
    A src/error.cpp
    M src/error.hpp
    A src/ew_input.hpp
    A src/gsl_utils.cpp
    A src/gsl_utils.hpp
    M src/gut_scale_calculator.hpp
    M src/initial_guesser.hpp
    M src/lattice_compound_constraint.hpp
    M src/lattice_constraint.cpp
    M src/lattice_constraint.hpp
    A src/lattice_convergence_tester.hpp
    M src/lattice_foreign_constraint.hpp
    M src/lattice_initial_guesser.hpp
    A src/lattice_model.cpp
    A src/lattice_model.hpp
    M src/lattice_numerical_constraint.cpp
    M src/lattice_numerical_constraint.hpp
    M src/lattice_solver.cpp
    M src/lattice_solver.hpp
    M src/linalg.cpp
    M src/linalg.h
    M src/lowe.cpp
    M src/lowe.h
    M src/matching.hpp
    M src/mathdefs.hpp
    A src/minimizer.hpp
    M src/module.mk
    M src/mycomplex.h
    M src/numerics.cpp
    M src/numerics.h
    A src/problems.hpp
    A src/program_options.cpp
    A src/program_options.hpp
    M src/rg_flow.hpp
    M src/rge.cpp
    M src/rge.h
    M src/rk.cpp
    M src/rk.hpp
    A src/root_finder.hpp
    A src/scan.cpp
    A src/scan.hpp
    A src/slha_io.cpp
    A src/slha_io.hpp
    A src/small_matrices.hpp
    M src/stopwatch.cpp
    M src/stopwatch.hpp
    R src/tvmet_supplements.h
    M src/two_scale_composite_convergence_tester.cpp
    M src/two_scale_composite_convergence_tester.hpp
    M src/two_scale_constraint.hpp
    M src/two_scale_convergence_tester.cpp
    M src/two_scale_convergence_tester.hpp
    M src/two_scale_convergence_tester_skeleton.hpp
    M src/two_scale_initial_guesser.hpp
    M src/two_scale_matching.hpp
    M src/two_scale_model.hpp
    M src/two_scale_running_precision.cpp
    M src/two_scale_running_precision.hpp
    M src/two_scale_solver.cpp
    M src/two_scale_solver.hpp
    M src/utils.cpp
    M src/utils.h
    A src/wrappers.cpp
    A src/wrappers.hpp
    R src/writeNRGE.m
    R src/writeRGE.m
    M src/xpr-matrix.h
    A templates/E6SSM/FlexibleSUSY.m.in
    A templates/FlexibleSUSY.m.in
    A templates/MRSSM/FlexibleSUSY.m.in
    A templates/MRSSM/LesHouches.in.MRSSM
    A templates/MSSM/FlexibleSUSY.m.in
    A templates/MSSM/LesHouches.in.MSSM
    A templates/NMSSM/FlexibleSUSY.m.in
    A templates/NMSSM/LesHouches.in.NMSSM
    A templates/SM/FlexibleSUSY.m.in
    A templates/UMSSM/FlexibleSUSY.m.in
    A templates/YukawaCMSSM/FlexibleSUSY.m.in
    A templates/convergence_tester.hpp.in
    A templates/high_scale_constraint.hpp.in
    A templates/info.cpp.in
    A templates/info.hpp.in
    A templates/initial_guesser.hpp.in
    A templates/input_parameters.hpp.in
    A templates/lattice.mk.in
    A templates/lattice_convergence_tester.cpp.in
    A templates/lattice_convergence_tester.hpp.in
    A templates/lattice_high_scale_constraint.cpp.in
    A templates/lattice_high_scale_constraint.hpp.in
    A templates/lattice_info.hpp.in
    A templates/lattice_initial_guesser.cpp.in
    A templates/lattice_initial_guesser.hpp.in
    A templates/lattice_initial_guesser_low_scale_model.cpp.in
    A templates/lattice_initial_guesser_low_scale_model.hpp.in
    A templates/lattice_low_scale_constraint.cpp.in
    A templates/lattice_low_scale_constraint.hpp.in
    A templates/lattice_model.cpp.in
    A templates/lattice_model.hpp.in
    A templates/lattice_model_betafunctions.cpp.in
    A templates/lattice_susy_scale_constraint.cpp.in
    A templates/lattice_susy_scale_constraint.hpp.in
    A templates/lowMSSM/FlexibleSUSY.m.in
    A templates/lowMSSM/LesHouches.in.lowMSSM
    A templates/low_scale_constraint.hpp.in
    A templates/low_scale_spectrum_generator.hpp.in
    A templates/minMSSM/FlexibleSUSY.m.in
    A templates/model.hpp.in
    A templates/module.mk
    A templates/module.mk.in
    A templates/physical.cpp.in
    A templates/physical.hpp.in
    A templates/plot_rge_running.gnuplot.in
    A templates/plot_spectrum.gnuplot.in
    A templates/rootMSSM/FlexibleSUSY.m.in
    A templates/run.cpp.in
    A templates/scan.cpp.in
    A templates/slha_io.cpp.in
    A templates/slha_io.hpp.in
    A templates/spectrum_generator.hpp.in
    A templates/start.m.in
    A templates/susy_scale_constraint.hpp.in
    A templates/two_scale_convergence_tester.cpp.in
    A templates/two_scale_convergence_tester.hpp.in
    A templates/two_scale_high_scale_constraint.cpp.in
    A templates/two_scale_high_scale_constraint.hpp.in
    A templates/two_scale_initial_guesser.cpp.in
    A templates/two_scale_initial_guesser.hpp.in
    A templates/two_scale_initial_guesser_low_scale_model.cpp.in
    A templates/two_scale_initial_guesser_low_scale_model.hpp.in
    A templates/two_scale_low_scale_constraint.cpp.in
    A templates/two_scale_low_scale_constraint.hpp.in
    A templates/two_scale_model.cpp.in
    A templates/two_scale_model.hpp.in

  Log Message:
  -----------
  Merge branch 'lattice' of /soft/users/theory/FlexibleSUSY into lattice


  Commit: 31ef53d38d52313513e8dad218dc6c5968c6d968
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/31ef53d38d52313513e8dad218dc6c5968c6d968
  Author: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
  Date:   2013-09-12 (Thu, 12 Sep 2013)

  Changed paths:
    M templates/module.mk.in

  Log Message:
  -----------
  protect module.mk.in targets against additional execution rules


  Commit: e12cc70eb978920f5f5b727a5dc18cb1b3c86aeb
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/e12cc70eb978920f5f5b727a5dc18cb1b3c86aeb
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-12 (Thu, 12 Sep 2013)

  Changed paths:
    M templates/module.mk.in

  Log Message:
  -----------
  templates/module.mk.in: restore a lost change

Commit f67057a9b2b765c1f89b5a22ba92d7be5e6cbcea introduced a block in
templates/module.mk.in which includes lattice.mk.  This block was lost
probably due to the merger in commit
1ff355256407e7949f85b2bd7d4e713cbb8392b7.  This commit restores it.


  Commit: 0ac7de95060267ccf76ab980a6b00c506766641f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/0ac7de95060267ccf76ab980a6b00c506766641f
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-12 (Thu, 12 Sep 2013)

  Changed paths:
    M meta/AnomalousDimension.m
    M meta/BetaFunction.m
    M meta/CConversion.m
    M meta/Constraint.m
    M meta/ConvergenceTester.m
    M meta/EWSB.m
    M meta/FlexibleSUSY.m
    M meta/LoopMasses.m
    M meta/Parameters.m
    M meta/Phases.m
    M meta/SelfEnergies.m
    M meta/TestSuite.m
    M meta/TextFormatting.m
    M meta/ThresholdCorrections.m
    M meta/Traces.m
    M meta/TreeMasses.m
    M meta/TwoLoop.m
    M meta/WriteOut.m
    M test/test_CConversion.m
    M test/test_Constraint.m
    M test/test_SelfEnergies.m
    M test/test_TextFormatting.m
    M test/test_ThresholdCorrections.m
    M test/test_TreeMasses.m

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 630ccef93ee1da149326c8ba369b0d726f7d4f17
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/630ccef93ee1da149326c8ba369b0d726f7d4f17
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-19 (Thu, 19 Sep 2013)

  Changed paths:
    M .gitignore
    M README
    M configure
    A doc/chapters/output.tex
    A doc/chapters/overview.tex
    A doc/chapters/quick_start.tex
    A doc/chapters/usage.tex
    A doc/flexiblesusy.tex
    R doc/flexisusy.1
    M doc/module.mk
    M examples/module.mk
    M examples/run_softpoint.cpp
    M examples/run_softpoint.h
    M examples/run_softsusy.cpp
    M meta/ConvergenceTester.m
    M meta/EWSB.m
    M meta/FlexibleSUSY.m
    M models/smssm/module.mk
    M models/smssm/mssm_parameter_point.hpp
    M models/smssm/mssm_solver.h
    M models/smssm/mssm_two_scale_convergence_tester.cpp
    M models/smssm/mssm_two_scale_initial_guesser.cpp
    M models/smssm/physpars.cpp
    M models/smssm/physpars.h
    M models/smssm/softpars.cpp
    M models/smssm/softpars.h
    M models/smssm/softsusy.cpp
    M models/smssm/softsusy.h
    A models/snmssm/module.mk
    A models/snmssm/nmssm1loop.f
    A models/snmssm/nmssm1loop.h
    A models/snmssm/nmssm2loop.f
    A models/snmssm/nmssm2loop.h
    A models/snmssm/nmssmUtils.cpp
    A models/snmssm/nmssmUtils.h
    A models/snmssm/nmssmsoftpars.cpp
    A models/snmssm/nmssmsoftpars.h
    A models/snmssm/nmssmsoftsusy.cpp
    A models/snmssm/nmssmsoftsusy.h
    A models/snmssm/nmssmsusy.cpp
    A models/snmssm/nmssmsusy.h
    A models/snmssm/snmssm.hpp
    A models/snmssm/snmssm_parameter_point.hpp
    A models/snmssm/snmssm_two_scale.cpp
    A models/snmssm/snmssm_two_scale.hpp
    A models/snmssm/snmssm_two_scale_convergence_tester.cpp
    A models/snmssm/snmssm_two_scale_convergence_tester.hpp
    A models/snmssm/snmssm_two_scale_initial_guesser.cpp
    A models/snmssm/snmssm_two_scale_initial_guesser.hpp
    A models/snmssm/snmssm_two_scale_low_scale_constraint.cpp
    A models/snmssm/snmssm_two_scale_low_scale_constraint.hpp
    A models/snmssm/snmssm_two_scale_sugra_constraint.cpp
    A models/snmssm/snmssm_two_scale_sugra_constraint.hpp
    A models/snmssm/snmssm_two_scale_susy_scale_constraint.cpp
    A models/snmssm/snmssm_two_scale_susy_scale_constraint.hpp
    M src/wrappers.hpp
    M templates/MSSM/LesHouches.in.MSSM
    M templates/NMSSM/FlexibleSUSY.m.in
    M templates/NMSSM/LesHouches.in.NMSSM
    M templates/two_scale_convergence_tester.cpp.in
    M test/module.mk
    M test/test_MSSM_low_scale_constraint.cpp
    M test/test_MSSM_model.cpp
    M test/test_MSSM_spectrum.cpp
    A test/test_NMSSM.hpp
    A test/test_NMSSM_beta_functions.cpp
    A test/test_NMSSM_ewsb.cpp
    A test/test_NMSSM_high_scale_constraint.cpp
    A test/test_NMSSM_initial_guesser.cpp
    A test/test_NMSSM_low_scale_constraint.cpp
    A test/test_NMSSM_one_loop_spectrum.cpp
    A test/test_NMSSM_susy_scale_constraint.cpp
    A test/test_NMSSM_tree_level_spectrum.cpp
    M test/test_two_scale_mssm_solver.cpp

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 6701692af96f3c00269d86af2010a7df1b4e1aa9
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/6701692af96f3c00269d86af2010a7df1b4e1aa9
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-20 (Fri, 20 Sep 2013)

  Changed paths:
    M meta/EWSB.m
    M meta/FlexibleSUSY.m
    M models/snmssm/nmssmsoftsusy.cpp
    M models/snmssm/nmssmsoftsusy.h
    A templates/NoZ3NMSSM/FlexibleSUSY.m.in
    M test/module.mk
    A test/test_EWSB.m
    A test/test_NMSSM_spectrum.cpp

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 4cd809af261625f46f3781f83847908ec976f2ac
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/4cd809af261625f46f3781f83847908ec976f2ac
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-22 (Sun, 22 Sep 2013)

  Changed paths:
    M configure
    M examples/module.mk
    R examples/run_smssm.cpp
    M meta/EWSB.m
    M meta/FlexibleSUSY.m
    A models/SoftsusyMSSM/module.mk
    A models/SoftsusyMSSM/mssm.hpp
    A models/SoftsusyMSSM/mssmUtils.cpp
    A models/SoftsusyMSSM/mssmUtils.h
    A models/SoftsusyMSSM/mssm_parameter_point.hpp
    A models/SoftsusyMSSM/mssm_solver.h
    A models/SoftsusyMSSM/mssm_two_scale.cpp
    A models/SoftsusyMSSM/mssm_two_scale.hpp
    A models/SoftsusyMSSM/mssm_two_scale_convergence_tester.cpp
    A models/SoftsusyMSSM/mssm_two_scale_convergence_tester.hpp
    A models/SoftsusyMSSM/mssm_two_scale_initial_guesser.cpp
    A models/SoftsusyMSSM/mssm_two_scale_initial_guesser.hpp
    A models/SoftsusyMSSM/mssm_two_scale_low_scale_constraint.cpp
    A models/SoftsusyMSSM/mssm_two_scale_low_scale_constraint.hpp
    A models/SoftsusyMSSM/mssm_two_scale_sugra_constraint.cpp
    A models/SoftsusyMSSM/mssm_two_scale_sugra_constraint.hpp
    A models/SoftsusyMSSM/mssm_two_scale_susy_scale_constraint.cpp
    A models/SoftsusyMSSM/mssm_two_scale_susy_scale_constraint.hpp
    A models/SoftsusyMSSM/physpars.cpp
    A models/SoftsusyMSSM/physpars.h
    A models/SoftsusyMSSM/softpars.cpp
    A models/SoftsusyMSSM/softpars.h
    A models/SoftsusyMSSM/softsusy.cpp
    A models/SoftsusyMSSM/softsusy.h
    A models/SoftsusyMSSM/susy.cpp
    A models/SoftsusyMSSM/susy.h
    A models/SoftsusyMSSM/twoloophiggs.f
    A models/SoftsusyMSSM/twoloophiggs.h
    A models/SoftsusyNMSSM/module.mk
    A models/SoftsusyNMSSM/nmssm1loop.f
    A models/SoftsusyNMSSM/nmssm1loop.h
    A models/SoftsusyNMSSM/nmssm2loop.f
    A models/SoftsusyNMSSM/nmssm2loop.h
    A models/SoftsusyNMSSM/nmssmUtils.cpp
    A models/SoftsusyNMSSM/nmssmUtils.h
    A models/SoftsusyNMSSM/nmssmsoftpars.cpp
    A models/SoftsusyNMSSM/nmssmsoftpars.h
    A models/SoftsusyNMSSM/nmssmsoftsusy.cpp
    A models/SoftsusyNMSSM/nmssmsoftsusy.h
    A models/SoftsusyNMSSM/nmssmsusy.cpp
    A models/SoftsusyNMSSM/nmssmsusy.h
    A models/SoftsusyNMSSM/snmssm.hpp
    A models/SoftsusyNMSSM/snmssm_parameter_point.hpp
    A models/SoftsusyNMSSM/snmssm_two_scale.cpp
    A models/SoftsusyNMSSM/snmssm_two_scale.hpp
    A models/SoftsusyNMSSM/snmssm_two_scale_convergence_tester.cpp
    A models/SoftsusyNMSSM/snmssm_two_scale_convergence_tester.hpp
    A models/SoftsusyNMSSM/snmssm_two_scale_initial_guesser.cpp
    A models/SoftsusyNMSSM/snmssm_two_scale_initial_guesser.hpp
    A models/SoftsusyNMSSM/snmssm_two_scale_low_scale_constraint.cpp
    A models/SoftsusyNMSSM/snmssm_two_scale_low_scale_constraint.hpp
    A models/SoftsusyNMSSM/snmssm_two_scale_sugra_constraint.cpp
    A models/SoftsusyNMSSM/snmssm_two_scale_sugra_constraint.hpp
    A models/SoftsusyNMSSM/snmssm_two_scale_susy_scale_constraint.cpp
    A models/SoftsusyNMSSM/snmssm_two_scale_susy_scale_constraint.hpp
    R models/smssm/module.mk
    R models/smssm/mssm.hpp
    R models/smssm/mssmUtils.cpp
    R models/smssm/mssmUtils.h
    R models/smssm/mssm_parameter_point.hpp
    R models/smssm/mssm_solver.h
    R models/smssm/mssm_two_scale.cpp
    R models/smssm/mssm_two_scale.hpp
    R models/smssm/mssm_two_scale_convergence_tester.cpp
    R models/smssm/mssm_two_scale_convergence_tester.hpp
    R models/smssm/mssm_two_scale_initial_guesser.cpp
    R models/smssm/mssm_two_scale_initial_guesser.hpp
    R models/smssm/mssm_two_scale_low_scale_constraint.cpp
    R models/smssm/mssm_two_scale_low_scale_constraint.hpp
    R models/smssm/mssm_two_scale_sugra_constraint.cpp
    R models/smssm/mssm_two_scale_sugra_constraint.hpp
    R models/smssm/mssm_two_scale_susy_scale_constraint.cpp
    R models/smssm/mssm_two_scale_susy_scale_constraint.hpp
    R models/smssm/physpars.cpp
    R models/smssm/physpars.h
    R models/smssm/softpars.cpp
    R models/smssm/softpars.h
    R models/smssm/softsusy.cpp
    R models/smssm/softsusy.h
    R models/smssm/susy.cpp
    R models/smssm/susy.h
    R models/smssm/twoloophiggs.f
    R models/smssm/twoloophiggs.h
    R models/snmssm/module.mk
    R models/snmssm/nmssm1loop.f
    R models/snmssm/nmssm1loop.h
    R models/snmssm/nmssm2loop.f
    R models/snmssm/nmssm2loop.h
    R models/snmssm/nmssmUtils.cpp
    R models/snmssm/nmssmUtils.h
    R models/snmssm/nmssmsoftpars.cpp
    R models/snmssm/nmssmsoftpars.h
    R models/snmssm/nmssmsoftsusy.cpp
    R models/snmssm/nmssmsoftsusy.h
    R models/snmssm/nmssmsusy.cpp
    R models/snmssm/nmssmsusy.h
    R models/snmssm/snmssm.hpp
    R models/snmssm/snmssm_parameter_point.hpp
    R models/snmssm/snmssm_two_scale.cpp
    R models/snmssm/snmssm_two_scale.hpp
    R models/snmssm/snmssm_two_scale_convergence_tester.cpp
    R models/snmssm/snmssm_two_scale_convergence_tester.hpp
    R models/snmssm/snmssm_two_scale_initial_guesser.cpp
    R models/snmssm/snmssm_two_scale_initial_guesser.hpp
    R models/snmssm/snmssm_two_scale_low_scale_constraint.cpp
    R models/snmssm/snmssm_two_scale_low_scale_constraint.hpp
    R models/snmssm/snmssm_two_scale_sugra_constraint.cpp
    R models/snmssm/snmssm_two_scale_sugra_constraint.hpp
    R models/snmssm/snmssm_two_scale_susy_scale_constraint.cpp
    R models/snmssm/snmssm_two_scale_susy_scale_constraint.hpp
    R templates/NoZ3NMSSM/FlexibleSUSY.m.in
    A templates/SMSSM/FlexibleSUSY.m.in
    M templates/start.m.in
    M test/module.mk
    M test/test_EWSB.m

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: b4dc74a3d41f456c51f4053e721490a72941151c
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/b4dc74a3d41f456c51f4053e721490a72941151c
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-23 (Mon, 23 Sep 2013)

  Changed paths:
    M meta/Parametrization.m

  Log Message:
  -----------
  meta/Parametrization.m: add KillIm[], which suppresses imaginary parts


  Commit: 5b696b6a675296e723b1e9e6ec614fb7e3d91914
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/5b696b6a675296e723b1e9e6ec614fb7e3d91914
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-24 (Tue, 24 Sep 2013)

  Changed paths:
    M meta/Lattice.m
    M meta/TextFormatting.m
    M test/test_TextFormatting.m

  Log Message:
  -----------
  meta/TextFormatting.m: add WrapText[], a faster text wrapper

WrapText[text_String, maxWidth_Integer, indentation_Integer] is much
faster than WrapLines[], and therefore is better suited to the lattice
method which can produce a long C source.  It does not split
multi-character operators such as ++, <<, *=.  It takes care of string
constants containing \".  The semantics of maxWidth is different from
that for WrapLines[]: WrapText[] allows a line (excluding "\n") to be
maxWidth characters long.


  Commit: 1ed36ff74e32aa5979e367ca8930c8850ca5e0b4
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/1ed36ff74e32aa5979e367ca8930c8850ca5e0b4
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-24 (Tue, 24 Sep 2013)

  Changed paths:
    M meta/AnomalousDimension.m
    M meta/BetaFunction.m
    M meta/CConversion.m
    M meta/FlexibleSUSY.m
    M meta/Parameters.m
    M meta/WriteOut.m
    M test/test_CConversion.m

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 7c9572a2b79bc662343a9f5d2483788da429871f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/7c9572a2b79bc662343a9f5d2483788da429871f
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-09-28 (Sat, 28 Sep 2013)

  Changed paths:
    A src/linalg2.hpp
    M test/module.mk
    A test/test_linalg2.cpp

  Log Message:
  -----------
  Add diagonalization procedures for complex matrices

Add singular value decomposition of a complex (rectangular) matrix,
diagonalization of a complex symmetric and a complex hermitian matrix,
as well as their real counterparts.


  Commit: 009aec04d0c7ab59a3a1ad8244d7c8bfbc71563c
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/009aec04d0c7ab59a3a1ad8244d7c8bfbc71563c
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-02 (Wed, 02 Oct 2013)

  Changed paths:
    M config/Makefile.in
    A config/abspathx.mk
    M configure
    M createmodel
    M doc/chapters/output.tex
    M doc/chapters/usage.tex
    M doc/flexiblesusy.tex
    A doc/tikz-uml.sty
    A doc/xstring.sty
    A doc/xstring.tex
    M examples/module.mk
    M meta/CConversion.m
    M meta/EWSB.m
    M meta/FlexibleSUSY.m
    M meta/WriteOut.m
    M models/SoftsusyMSSM/mssm_two_scale.cpp
    M models/SoftsusyMSSM/mssm_two_scale.hpp
    M models/SoftsusyNMSSM/snmssm_two_scale.cpp
    M models/SoftsusyNMSSM/snmssm_two_scale.hpp
    M models/sm/sm_two_scale.cpp
    M models/sm/sm_two_scale.hpp
    M src/betafunction.cpp
    M src/betafunction.hpp
    M src/command_line_options.cpp
    M src/command_line_options.hpp
    M src/lattice_constraint.cpp
    M src/lattice_constraint.hpp
    M src/lattice_model.hpp
    M src/lattice_solver.cpp
    M src/linalg.cpp
    M src/linalg.h
    M src/problems.hpp
    M src/rk.cpp
    M src/rk.hpp
    M src/two_scale_model.hpp
    M src/two_scale_solver.cpp
    M src/two_scale_solver.hpp
    M templates/MRSSM/FlexibleSUSY.m.in
    M templates/MSSM/LesHouches.in.MSSM
    M templates/NMSSM/LesHouches.in.NMSSM
    M templates/SMSSM/FlexibleSUSY.m.in
    M templates/lattice_model.cpp.in
    M templates/lattice_model.hpp.in
    M templates/low_scale_spectrum_generator.hpp.in
    M templates/module.mk.in
    M templates/run.cpp.in
    M templates/scan.cpp.in
    M templates/slha_io.cpp.in
    M templates/spectrum_generator.hpp.in
    M templates/two_scale_initial_guesser.cpp.in
    M templates/two_scale_initial_guesser_low_scale_model.cpp.in
    M templates/two_scale_initial_guesser_low_scale_model.hpp.in
    M templates/two_scale_model.cpp.in
    M templates/two_scale_model.hpp.in
    M test/module.mk
    A test/space dir/Makefile.in
    M test/test_EWSB.m
    M test/test_MSSM_slha_output.cpp
    M test/test_NMSSM_ewsb.cpp
    A test/test_SMSSM.hpp
    A test/test_SMSSM_beta_functions.cpp
    A test/test_SMSSM_ewsb.cpp
    A test/test_SMSSM_tree_level_spectrum.cpp
    M test/test_benchmark.cpp
    M test/test_betafunction.cpp
    M test/test_rk.cpp
    A test/test_space_dir.sh
    M test/test_two_scale_mssm_solver.cpp
    M test/test_two_scale_running_precision.cpp
    M test/test_two_scale_solver.cpp

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 4853bf36c169d0e888d42fcb741acd18680b4918
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/4853bf36c169d0e888d42fcb741acd18680b4918
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-05 (Sat, 05 Oct 2013)

  Changed paths:
    M meta/LoopMasses.m
    M meta/TreeMasses.m
    M templates/MRSSM/FlexibleSUSY.m.in
    M test/test_space_dir.sh

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 30295847b27fba10124fb8fc0766fa86aead6538
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/30295847b27fba10124fb8fc0766fa86aead6538
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-07 (Mon, 07 Oct 2013)

  Changed paths:
    M configure
    M doc/flexiblesusy.tex
    A doc/version.tex.in
    M meta/FlexibleSUSY.m
    M src/wrappers.cpp
    M templates/E6SSM/FlexibleSUSY.m.in
    M templates/FlexibleSUSY.m.in
    M templates/MRSSM/FlexibleSUSY.m.in
    M templates/MSSM/FlexibleSUSY.m.in
    M templates/NMSSM/FlexibleSUSY.m.in
    M templates/SM/FlexibleSUSY.m.in
    M templates/SMSSM/FlexibleSUSY.m.in
    M templates/UMSSM/FlexibleSUSY.m.in
    M templates/YukawaCMSSM/FlexibleSUSY.m.in
    M templates/lowMSSM/FlexibleSUSY.m.in
    M templates/minMSSM/FlexibleSUSY.m.in
    M templates/rootMSSM/FlexibleSUSY.m.in
    M test/test_wrappers.cpp

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 2af7792883b6ab16f6cf7da0e1422f496f4f6ffc
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/2af7792883b6ab16f6cf7da0e1422f496f4f6ffc
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-11 (Fri, 11 Oct 2013)

  Changed paths:
    M src/linalg2.hpp
    M test/test_linalg2.cpp

  Log Message:
  -----------
  Add svd procedures that return singular values in ascending order


  Commit: 69f1c5812ac39aa6f671033d70876c1f217d3cf3
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/69f1c5812ac39aa6f671033d70876c1f217d3cf3
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-14 (Mon, 14 Oct 2013)

  Changed paths:
    M meta/Parametrization.m

  Log Message:
  -----------
  meta/Parametrization.m: add intermediate levels of parameter suppression


  Commit: 37fd4099350cbd737be3e4325466baec9b31edf7
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/37fd4099350cbd737be3e4325466baec9b31edf7
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-14 (Mon, 14 Oct 2013)

  Changed paths:
    M meta/Lattice.m
    M templates/lattice_model.cpp.in
    M templates/lattice_model.hpp.in
    M templates/lattice_model_betafunctions.cpp.in
    M test/test_Lattice.m

  Log Message:
  -----------
  Clean-ups of lattice code


  Commit: 9c2fc8037d9719ae5c1935edb00d85b05cd7391d
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/9c2fc8037d9719ae5c1935edb00d85b05cd7391d
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-14 (Mon, 14 Oct 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: reduce expression transformation rules


  Commit: d2c4269c675f21e1589720f96fa5cb610a46a39b
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/d2c4269c675f21e1589720f96fa5cb610a46a39b
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-14 (Mon, 14 Oct 2013)

  Changed paths:
    M meta/FlexibleSUSY.m
    M meta/Lattice.m
    M meta/TreeMasses.m
    M templates/lattice_model.hpp.in
    A templates/lattice_model_interactions.cpp.in

  Log Message:
  -----------
  Add mass matrix diagonalization to lattice code


  Commit: 6cdb42f8180d3a69d7e3965741e531a31ea7743c
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/6cdb42f8180d3a69d7e3965741e531a31ea7743c
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-14 (Mon, 14 Oct 2013)

  Changed paths:
    M meta/Lattice.m
    M meta/TextFormatting.m

  Log Message:
  -----------
  Introduce global configuration variable $flexiblesusyCSrcChunkSize


  Commit: 9f6cb59eb828a39441274aaf84ee9493e6edc6f4
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/9f6cb59eb828a39441274aaf84ee9493e6edc6f4
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-14 (Mon, 14 Oct 2013)

  Changed paths:
    M meta/TextFormatting.m

  Log Message:
  -----------
  meta/TextFormatting.m: increase $IterationLimit in WrapText[]


  Commit: 37d8aadb998157f118fbd7f809c637c8ff1d15ca
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/37d8aadb998157f118fbd7f809c637c8ff1d15ca
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-14 (Mon, 14 Oct 2013)

  Changed paths:
    M meta/TextFormatting.m
    M test/test_TextFormatting.m

  Log Message:
  -----------
  Fix a bug in WrapText[]


  Commit: 8e6b5adca057be10476890ef322db918a5c52c50
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/8e6b5adca057be10476890ef322db918a5c52c50
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-14 (Mon, 14 Oct 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: let mass name encode its dimension

For instance, chargino mass eigenvalues are called MCha, and sneutrino
mass eigenvalues are called M2Sv.


  Commit: 9ec3590bcbd5188cf47a0f8e5a7323fde1db45bc
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/9ec3590bcbd5188cf47a0f8e5a7323fde1db45bc
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-15 (Tue, 15 Oct 2013)

  Changed paths:
    M .gitignore
    M configure
    M meta/FlexibleSUSY.m
    M meta/SelfEnergies.m
    M src/linalg.h

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 808f319d28c401705c45c7e55d5be1bd66724ea3
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/808f319d28c401705c45c7e55d5be1bd66724ea3
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-15 (Tue, 15 Oct 2013)

  Changed paths:
    M configure

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: db98709ba0f178190974655e39c44f26e011e8e2
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/db98709ba0f178190974655e39c44f26e011e8e2
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-15 (Tue, 15 Oct 2013)

  Changed paths:
    M configure

  Log Message:
  -----------
  configure: check for all used lapack subroutines


  Commit: fecbae54a6a237569eff036f132952ebee4d88e7
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/fecbae54a6a237569eff036f132952ebee4d88e7
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-19 (Sat, 19 Oct 2013)

  Changed paths:
    A src/sum.hpp
    M test/module.mk
    A test/test_sum.cpp

  Log Message:
  -----------
  Add summation macro


  Commit: a931f6be3a9536117591ce8b0a267de85463db43
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/a931f6be3a9536117591ce8b0a267de85463db43
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-23 (Wed, 23 Oct 2013)

  Changed paths:
    M meta/FlexibleSUSY.m
    M meta/Lattice.m
    M meta/Parametrization.m

  Log Message:
  -----------
  Clean up lattice code


  Commit: b5b858a80e30dc50be8b2ae00dfc95b7ce62952f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/b5b858a80e30dc50be8b2ae00dfc95b7ce62952f
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-23 (Wed, 23 Oct 2013)

  Changed paths:
    M meta/Lattice.m
    M meta/Parametrization.m

  Log Message:
  -----------
  Add to lattice code functions to generate vertex expressions

This also addresses the following issue documented in SelfEnergies.m:

(* Don't know how to deal with SVD here.  So, the vertex
   {bar[UFe],VP,Fe} will not be rotated correctly.
   Maybe the PL and PR indicators on the original
   coupling will help us here? *)


  Commit: 8078e449f3a7cd72d21c5de575302a2dc083db9f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/8078e449f3a7cd72d21c5de575302a2dc083db9f
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-23 (Wed, 23 Oct 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  Check full Lorentz structure to find a mixing matrix

In the previous commit, RewriteUnrotatedField[] determined the fermion
mixing matrix based on the following two factors:

  (a) whether the coupling has the form Cp[__][PL] or Cp[__][PR]
  (b) whether the vertex type is FFS or FFV

Now, it examines instead the full Lorentz structure returned by
SARAH`Vertex.  Each combination of the above two factors reduces to:

  PL, PR, LorentzProduct[gamma[_], PL], LorentzProduct[gamma[_], PR],

The background reason for this change was that I was not sure whether
FFV might denote also a (non-renormalizable) dipole type operator or
not.


  Commit: 48d47588c249d368048418c81130e91fbc188b80
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/48d47588c249d368048418c81130e91fbc188b80
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-24 (Thu, 24 Oct 2013)

  Changed paths:
    M .gitignore
    M README
    M config/Makefile.in
    M config/config.h.in
    M config/flexiblesusy-config.in
    M configure
    M doc/chapters/overview.tex
    M doc/chapters/usage.tex
    M doc/flexiblesusy.tex
    M doc/module.mk
    M doc/version.tex.in
    M examples/module.mk
    M meta/FlexibleSUSY.m
    M src/command_line_options.cpp
    M src/module.mk
    M templates/lattice.mk.in
    M templates/low_scale_spectrum_generator.hpp.in
    M templates/module.mk.in
    M templates/slha_io.cpp.in
    M templates/spectrum_generator.hpp.in
    M test/module.mk

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 73f1a791cdbf874f5f5d3fc1ae17e10d085b2c6e
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/73f1a791cdbf874f5f5d3fc1ae17e10d085b2c6e
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-24 (Thu, 24 Oct 2013)

  Changed paths:
    M configure

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: e11c50e2afd529522e7e58853f758c841ac0c62a
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/e11c50e2afd529522e7e58853f758c841ac0c62a
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-24 (Thu, 24 Oct 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: fix external colours when resolving colour factor


  Commit: a330ab020ee63795b1545418ae9012feea241c62
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/a330ab020ee63795b1545418ae9012feea241c62
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-25 (Fri, 25 Oct 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: strip residual group structures in vertices


  Commit: f5438e5242629991d383593ecc7240c24834681f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/f5438e5242629991d383593ecc7240c24834681f
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-25 (Fri, 25 Oct 2013)

  Changed paths:
    M meta/TreeMasses.m
    M models/SoftsusyMSSM/mssmUtils.cpp
    M models/SoftsusyMSSM/mssm_two_scale_convergence_tester.cpp
    M models/SoftsusyMSSM/physpars.cpp
    M models/SoftsusyMSSM/physpars.h
    M models/SoftsusyMSSM/softsusy.cpp
    M models/SoftsusyNMSSM/nmssmUtils.cpp
    M models/SoftsusyNMSSM/nmssmUtils.h
    M models/SoftsusyNMSSM/nmssmsoftsusy.cpp
    M src/utils.cpp
    M src/utils.h
    M test/module.mk
    M test/test_SMSSM_ewsb.cpp
    A test/test_SMSSM_one_loop_spectrum.cpp

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 40e6ac0161aa3f8a6b31e47f13249b30bf94b92a
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/40e6ac0161aa3f8a6b31e47f13249b30bf94b92a
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-25 (Fri, 25 Oct 2013)

  Changed paths:
    M meta/Lattice.m
    M templates/lattice_model.hpp.in
    M templates/lattice_model_interactions.cpp.in

  Log Message:
  -----------
  Add matrix couplings to lattice model class


  Commit: 23c5a0c9b1fe854ff4dad89ed208f48972e28070
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/23c5a0c9b1fe854ff4dad89ed208f48972e28070
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-26 (Sat, 26 Oct 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: fix a bug in RenumberCpIndices[]


  Commit: d852de90b25b7e3339c4e609b7f2a142ac92a4fb
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/d852de90b25b7e3339c4e609b7f2a142ac92a4fb
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-26 (Sat, 26 Oct 2013)

  Changed paths:
    M meta/CConversion.m
    M meta/Lattice.m
    M src/wrappers.hpp

  Log Message:
  -----------
  Check more carefully whether C type of expression is real or complex


  Commit: a490dc34ea09e459c2038a7462e1c909ab9f7207
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/a490dc34ea09e459c2038a7462e1c909ab9f7207
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-27 (Sun, 27 Oct 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  Modify CForm of floating point number

By default, CForm[2.0] becomes `2.'.  This causes a compilation error
of the expression 2.0 Log[x] which translates to `2.*Log(x)' where
`.*' is interpreted as the pointer-to-member C++ operator.  This error
is avoided by modifying CForm[2.0] to `2.0'.

In addition, I changed the formatting so that CForm[2.0*^18] := 2e18
instead of 2.e18.


  Commit: 9fb1a6f507320f9da94d40710381b148ef734414
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/9fb1a6f507320f9da94d40710381b148ef734414
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-27 (Sun, 27 Oct 2013)

  Changed paths:
    M meta/Lattice.m
    M src/wrappers.hpp

  Log Message:
  -----------
  Convert indices when generating lattice C code


  Commit: 10387f10994d6bf4e1a30884ce76152731e4cf80
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/10387f10994d6bf4e1a30884ce76152731e4cf80
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-27 (Sun, 27 Oct 2013)

  Changed paths:
    M meta/FlexibleSUSY.m
    M meta/Lattice.m
    M templates/lattice_model.hpp.in

  Log Message:
  -----------
  Add phase definitions to lattice code


  Commit: 49a917ae19d05d879703e6d51302823f23d8843f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/49a917ae19d05d879703e6d51302823f23d8843f
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-27 (Sun, 27 Oct 2013)

  Changed paths:
    M meta/FlexibleSUSY.m
    M meta/Lattice.m
    M templates/lattice_model_interactions.cpp.in

  Log Message:
  -----------
  Add vertex routines to lattice code


  Commit: 266732740cdf4a472d5f4d7f3589cdf2afaae6a9
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/266732740cdf4a472d5f4d7f3589cdf2afaae6a9
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-27 (Sun, 27 Oct 2013)

  Changed paths:
    M models/SoftsusyNMSSM/nmssmsoftsusy.cpp
    M test/test_SMSSM_one_loop_spectrum.cpp

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 793b6a5d4bd9c55eabf39e09c654f8e38a8bfa39
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/793b6a5d4bd9c55eabf39e09c654f8e38a8bfa39
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-28 (Mon, 28 Oct 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  Pass MachinePrecision instead of $MachinePrecision to Ceiling[]

I found the example, Round[MachinePrecision], in the manual.


  Commit: 3c4ed9288821ec418cd3932b6d4c4f61eb23da9b
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/3c4ed9288821ec418cd3932b6d4c4f61eb23da9b
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-29 (Tue, 29 Oct 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  Simplify numerically real expressions

For instance, a Yukawa coupling is physically complex-valued, but it
can be declared as a real variable for the sake of numerical
simplicity.  In this case, the type of a C function calculating an
expression containing the Yukawa coupling has the possibility that it
can be declared real.


  Commit: ed4cd0c46b924d3ff084bb19dd7146616a01785b
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/ed4cd0c46b924d3ff084bb19dd7146616a01785b
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-29 (Tue, 29 Oct 2013)

  Changed paths:
    M src/sum.hpp
    M test/test_sum.cpp

  Log Message:
  -----------
  Change evaluation order of summation

The three terms in unroll_sum::eval() were reordered so that the terms
in the entire series are evaluated in the order of increasing index.
Hopefully this will lead to a potential performance enhancement by
serializing memory access.


  Commit: 80629d2656f48158e0b9c95fd7a10d4b86dfc466
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/80629d2656f48158e0b9c95fd7a10d4b86dfc466
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-29 (Tue, 29 Oct 2013)

  Changed paths:
    M test/test_sum.cpp

  Log Message:
  -----------
  test/test_sum.cpp: erase invalid examples rejected by clang++


  Commit: 16613c1df2dcd6b9bbd9e8b5ecfb47365f41dda8
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/16613c1df2dcd6b9bbd9e8b5ecfb47365f41dda8
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-29 (Tue, 29 Oct 2013)

  Changed paths:
    M src/wrappers.hpp
    M test/test_wrappers.cpp

  Log Message:
  -----------
  Add LispAnd(cond, expr) macro

This macro behaves like the `and' form in lisp.  If cond is true, it
evaluates expr and returns the value.  Otherwise, it returns false
without evaluating expr.


  Commit: 9b1208bc540e1bdcaace853723a9ad5f92e3b0e6
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/9b1208bc540e1bdcaace853723a9ad5f92e3b0e6
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-29 (Tue, 29 Oct 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  Translate SARAH`ThetaStep using LispAnd to lattice C code

This is to avoid invalid memory access out of the array index range.


  Commit: 08c8b2d84e3a7914f089060772df6b280948ce21
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/08c8b2d84e3a7914f089060772df6b280948ce21
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-29 (Tue, 29 Oct 2013)

  Changed paths:
    M doc/chapters/overview.tex
    A doc/paper.tex
    M meta/FlexibleSUSY.m
    M models/SoftsusyMSSM/susy.cpp
    M models/SoftsusyNMSSM/nmssmsoftsusy.cpp
    M models/SoftsusyNMSSM/nmssmsusy.cpp
    M templates/start.m.in
    M test/test.h
    M test/test_SMSSM_one_loop_spectrum.cpp

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 59f0e761193468f88d7b1dc52d54644fefd17376
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/59f0e761193468f88d7b1dc52d54644fefd17376
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-30 (Wed, 30 Oct 2013)

  Changed paths:
    M meta/FlexibleSUSY.m
    M meta/Lattice.m
    A meta/LatticeUtils.m
    M meta/Parametrization.m
    A meta/Vertices.m

  Log Message:
  -----------
  Introduce meta/Vertices.m to share VertexRules[] in both methods


  Commit: 940a5f35a5287e34b62ed29e6de46ce2a249d956
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/940a5f35a5287e34b62ed29e6de46ce2a249d956
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-10-30 (Wed, 30 Oct 2013)

  Changed paths:
    M models/SoftsusyNMSSM/nmssmsoftsusy.cpp
    M test/test_SMSSM_one_loop_spectrum.cpp

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 14fc386564c660e085a7b82cc058e18ccf955d07
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/14fc386564c660e085a7b82cc058e18ccf955d07
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-02 (Sat, 02 Nov 2013)

  Changed paths:
    M src/module.mk
    A src/pv.cpp
    A src/pv.hpp

  Log Message:
  -----------
  Add src/pv.[ch]pp providing interfaces to Passarino-Veltman functions

If LoopTools is in use, call ltini() before the first call, as
documented in the manual.


  Commit: 327817660526d69fb661fb679c0a796a7b598916
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/327817660526d69fb661fb679c0a796a7b598916
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-02 (Sat, 02 Nov 2013)

  Changed paths:
    M templates/module.mk.in

  Log Message:
  -----------
  templates/module.mk.in: include lattice.mk also when cleaning


  Commit: 036cb8886b3e7b9398b2e8d601c72db296664972
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/036cb8886b3e7b9398b2e8d601c72db296664972
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-02 (Sat, 02 Nov 2013)

  Changed paths:
    A src/cextensions.hpp
    M src/lattice_model.hpp
    M templates/lattice_model.hpp.in

  Log Message:
  -----------
  src/cextensions.hpp: check for gcc to define function attribute macro


  Commit: cb12d8a93e2dc4519700d5d6ae17e7123c79859d
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/cb12d8a93e2dc4519700d5d6ae17e7123c79859d
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-02 (Sat, 02 Nov 2013)

  Changed paths:
    M meta/Lattice.m
    M meta/LatticeUtils.m

  Log Message:
  -----------
  Add a workaround regarding mass matrix spec in lattice code


  Commit: 4c65f01022bd628168ee1c626776a130e2cfc6c1
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/4c65f01022bd628168ee1c626776a130e2cfc6c1
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-02 (Sat, 02 Nov 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: enforce native mass dimension on field mass parameter

Exclusively use mass^2 for fields of mass dimension 1 and mass^1 for
fields of mass dimension 3/2.


  Commit: 0531ac89c09c9a231bd1feeeb25d810251982c87
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/0531ac89c09c9a231bd1feeeb25d810251982c87
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-02 (Sat, 02 Nov 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: refine handling of reality conditions


  Commit: c79c5634aa7efeb96f76e2c79175465aeb61c08d
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/c79c5634aa7efeb96f76e2c79175465aeb61c08d
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-02 (Sat, 02 Nov 2013)

  Changed paths:
    M meta/Lattice.m
    M templates/lattice_model.hpp.in
    M templates/lattice_model_interactions.cpp.in

  Log Message:
  -----------
  Add n-point functions to lattice code


  Commit: 81ca1b481dbff15bb101dcc46db41abac25d24ff
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/81ca1b481dbff15bb101dcc46db41abac25d24ff
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-02 (Sat, 02 Nov 2013)

  Changed paths:
    A src/lattice_model_interactions.cpp
    A src/lattice_model_interactions.hpp
    M src/module.mk
    M templates/lattice_model.hpp.in
    M templates/lattice_model_interactions.cpp.in

  Log Message:
  -----------
  Factor common code out of interaction class for each model


  Commit: 2450bf48e112eceb0e9fbf800afb05d429d44e40
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/2450bf48e112eceb0e9fbf800afb05d429d44e40
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-02 (Sat, 02 Nov 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: suppress unused C function parameters

For this, CFxn object was restructured.


  Commit: a1ee79080d7b612835bcf975d3fdf42bc342f048
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/a1ee79080d7b612835bcf975d3fdf42bc342f048
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-02 (Sat, 02 Nov 2013)

  Changed paths:
    M src/utils.h
    M test/test_SMSSM_one_loop_spectrum.cpp

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 91dff54c87391c2299195d002d447294c0866c3b
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/91dff54c87391c2299195d002d447294c0866c3b
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-04 (Mon, 04 Nov 2013)

  Changed paths:
    M src/pv.cpp

  Log Message:
  -----------
  src/pv.cpp: call ltini() from constructor of an anonymous global object


  Commit: a43926d252ec137866e88bda5765886f35f58e78
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/a43926d252ec137866e88bda5765886f35f58e78
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-05 (Tue, 05 Nov 2013)

  Changed paths:
    M meta/module.mk

  Log Message:
  -----------
  meta/module.mk: add missing .m files


  Commit: 5825df4f466bb74d2399657315e3af97df8babca
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/5825df4f466bb74d2399657315e3af97df8babca
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-05 (Tue, 05 Nov 2013)

  Changed paths:
    M meta/Lattice.m
    M meta/Vertices.m

  Log Message:
  -----------
  meta/Vertices.m: eliminate redundant vertex rules

From: Alexander Voigt <Alexander.Voigt at physik.tu-dresden.de>
Subject: redundant vertices in vertexRules
To: Jae-hyeon Park <jae-hyeon.park at tu-dresden.de>
Date: Tue, 05 Nov 2013 10:15:55 +0100

Hi Jae-hyeon,

I'm currently rewriting the SelfEnergies.m module to reuse your vertex
expressions.

However, I noticed a small bug: For the MSSM we need for example the Z
self-energy with heavy particles in the loop (besides the full Z
self-energy).  The full Z self-energy contains the vertex

   Cp[VZ, conj[VWm], Hpm[{gI2_}]] .

The heavy Z self-energy contains the vertex

   Cp[VZ, conj[VWm], Hpm[{2}]] .

The problem is that the Vertices` module does not recognize that these
two vertices are identical.  As a result, the Vertices` module will
create two different vertex rules for them.  When I convert these to
C++ code, they result in the two functions

   Complex CLASSNAME::CpVZconjVWmHpm(unsigned ) const
   {
   ...
   }

   Complex CLASSNAME::CpVZconjVWmHpm(unsigned gI2) const
   {
   ...
   }

This leads to a compiler error because of ambiguous function
overloading.

To reproduce the error you can run:

  $ git co vertice
  $ git pull origin vertices   # merge my changes
  $ ./configure --with-models=MSSM
  $ make

Would you mind looking at the issue?

Many thanks in advance,
Alex


  Commit: 041a476f7495d0b4fa0b8ea6c585beb8c670ea5c
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/041a476f7495d0b4fa0b8ea6c585beb8c670ea5c
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-05 (Tue, 05 Nov 2013)

  Changed paths:
    M meta/Lattice.m
    M meta/SelfEnergies.m
    M meta/Vertices.m

  Log Message:
  -----------
  Move some private functions from meta/SelfEnergies.m to meta/Vertices.m


  Commit: e4cc7dbbfc847bcddef0f916f723ca0fd471919f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/e4cc7dbbfc847bcddef0f916f723ca0fd471919f
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-06 (Wed, 06 Nov 2013)

  Changed paths:
    M doc/chapters/output.tex
    M doc/paper.tex
    M meta/FlexibleSUSY.m
    M meta/SelfEnergies.m
    M models/SoftsusyMSSM/mssmUtils.cpp
    M models/SoftsusyMSSM/softsusy.cpp
    M models/SoftsusyNMSSM/nmssmUtils.cpp
    M models/SoftsusyNMSSM/nmssmsoftsusy.cpp
    M test/test_NMSSM_ewsb.cpp
    M test/test_SMSSM_ewsb.cpp
    M test/test_SelfEnergies.m

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 0a49050556bd8f67d27cd3e95a9ad0d8ce2a5238
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/0a49050556bd8f67d27cd3e95a9ad0d8ce2a5238
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-07 (Thu, 07 Nov 2013)

  Changed paths:
    M config/Makefile.in
    M configure
    A fflite/defs.h
    A fflite/externals.h
    A fflite/ff.h
    A fflite/ffca0.F
    A fflite/ffcb0.F
    A fflite/ffcb1.F
    A fflite/ffcb2p.F
    A fflite/ffcli2.F
    A fflite/fferr.h
    A fflite/ffinit.F
    A fflite/fflite.hpp
    A fflite/ffthre.F
    A fflite/ffwarn.h
    A fflite/ffxa0.F
    A fflite/ffxb0.F
    A fflite/ffxb1.F
    A fflite/ffxb2p.F
    A fflite/ffxli2.F
    A fflite/ini.F
    A fflite/lt.h
    A fflite/module.mk
    A fflite/types.h

  Log Message:
  -----------
  Introduce fflite module that compute loop functions

The fflite module is a subset of the FF library that is adapted to and
distributed as part of LoopTools 2.8.  The purpose to extract this
subset from LoopTools was to have thread-safe loop function routines
that accept complex (and therefore also negative) mass^2 arguments.
Calls to fflite subroutines bypass the internal cache of LoopTools.
It is unclear whether this would lead to a performance gain or loss.


  Commit: 53b014670b8c001bcdcee99e6575960b1e3bc7f2
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/53b014670b8c001bcdcee99e6575960b1e3bc7f2
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-08 (Fri, 08 Nov 2013)

  Changed paths:
    M src/pv.cpp
    M src/pv.hpp
    M test/module.mk
    A test/test_pv.cpp

  Log Message:
  -----------
  src/pv.[ch]pp: add complex -> complex loop functions

Loop functions accepting complex mass^2 arguments become available if
LoopTools or fflite is in use.

Declare const or pure function attributes to advise gcc that there is a
possibility to omit redundant function calls.


  Commit: 07757c5cc71caaf535b7ba6fb43d7b8e1cb9b472
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/07757c5cc71caaf535b7ba6fb43d7b8e1cb9b472
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-08 (Fri, 08 Nov 2013)

  Changed paths:
    M examples/module.mk
    M templates/module.mk.in
    M test/module.mk

  Log Message:
  -----------
  Link executables against libfflite if it is selected


  Commit: ebfb5ffd83ee1d23fc95a5ef21b6b37081dec7c2
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/ebfb5ffd83ee1d23fc95a5ef21b6b37081dec7c2
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-08 (Fri, 08 Nov 2013)

  Changed paths:
    M .gitignore
    M doc/module.mk
    M examples/lattice_fmssm.cpp
    M examples/lattice_fmssm_fmssmn.cpp
    M examples/lattice_numerical_fmssm.cpp
    M examples/lattice_numerical_fmssm_fmssmn.cpp
    M src/command_line_options.cpp
    M src/lattice_convergence_tester.hpp
    M src/linalg2.hpp
    M src/logger.hpp
    M test/module.mk

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: c11f7581f698b6ff1daa76add5413ea88cff76ca
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/c11f7581f698b6ff1daa76add5413ea88cff76ca
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-08 (Fri, 08 Nov 2013)

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 5cced817da561989c0388cd435537fac1feafa85
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/5cced817da561989c0388cd435537fac1feafa85
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-08 (Fri, 08 Nov 2013)

  Changed paths:
    M config/Makefile.in
    M configure

  Log Message:
  -----------
  Clean up configuration of fflite


  Commit: 53aecd58b47fc604edfb02a66c043313eefed8c8
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/53aecd58b47fc604edfb02a66c043313eefed8c8
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-12 (Tue, 12 Nov 2013)

  Changed paths:
    M doc/paper.tex
    M src/linalg2.hpp
    M test/test_linalg2.cpp

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: e01cbcdd8c177e0bf36da2826f81919ce993e951
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/e01cbcdd8c177e0bf36da2826f81919ce993e951
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-15 (Fri, 15 Nov 2013)

  Changed paths:
    M doc/paper.tex
    A legacy/conversion.cpp
    A legacy/conversion.hpp
    A legacy/diagonalization.cpp
    A legacy/diagonalization.hpp
    M legacy/module.mk
    M meta/AnomalousDimension.m
    M meta/BetaFunction.m
    M meta/CConversion.m
    M meta/Constraint.m
    M meta/ConvergenceTester.m
    M meta/FlexibleSUSY.m
    M meta/LoopMasses.m
    M meta/Parameters.m
    M meta/Phases.m
    M meta/SelfEnergies.m
    M meta/ThresholdCorrections.m
    M meta/TreeMasses.m
    M meta/WriteOut.m
    A src/numerics.hpp
    M src/slha_io.cpp
    M src/slha_io.hpp
    M src/wrappers.cpp
    M src/wrappers.hpp
    M templates/MSSM/LesHouches.in.MSSM
    M templates/NMSSM/LesHouches.in.NMSSM
    M templates/input_parameters.hpp.in
    M templates/low_scale_spectrum_generator.hpp.in
    M templates/physical.hpp.in
    M templates/run.cpp.in
    M templates/slha_io.cpp.in
    M templates/slha_io.hpp.in
    M templates/spectrum_generator.hpp.in
    M templates/two_scale_high_scale_constraint.cpp.in
    M templates/two_scale_high_scale_constraint.hpp.in
    M templates/two_scale_low_scale_constraint.cpp.in
    M templates/two_scale_model.cpp.in
    M templates/two_scale_model.hpp.in
    M test/module.mk
    M test/test.h
    M test/test_CConversion.m
    M test/test_MSSM.hpp
    M test/test_MSSM_low_scale_constraint.cpp
    M test/test_MSSM_model.cpp
    M test/test_MSSM_spectrum.cpp
    M test/test_MSSM_susy_scale_constraint.cpp
    M test/test_NMSSM_ewsb.cpp
    M test/test_NMSSM_low_scale_constraint.cpp
    M test/test_NMSSM_one_loop_spectrum.cpp
    M test/test_NMSSM_spectrum.cpp
    M test/test_NMSSM_susy_scale_constraint.cpp
    M test/test_NMSSM_tree_level_spectrum.cpp
    A test/test_Parameters.m
    M test/test_SMSSM_ewsb.cpp
    M test/test_SMSSM_one_loop_spectrum.cpp
    M test/test_SMSSM_tree_level_spectrum.cpp
    M test/test_benchmark.cpp
    M test/test_betafunction.cpp
    M test/test_lowMSSM.sh
    M test/test_wrappers.cpp

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: 40d0023edfd0b0a23f8cc8be16f60604b741bea3
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/40d0023edfd0b0a23f8cc8be16f60604b741bea3
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-20 (Wed, 20 Nov 2013)

  Changed paths:
    M configure
    M doc/paper.tex
    M meta/AnomalousDimension.m
    M meta/BetaFunction.m
    M meta/CConversion.m
    M meta/FlexibleSUSY.m
    M meta/Parameters.m
    M meta/WriteOut.m
    M src/slha_io.cpp
    M src/slha_io.hpp
    M templates/run.cpp.in
    M templates/slha_io.cpp.in
    M templates/slha_io.hpp.in
    M test/remove_input_blocks.awk
    M test/test_lowMSSM.sh

  Log Message:
  -----------
  Merge branch 'master' into lattice


  Commit: cfa26f03cb21788bb35d1521c330e1d7ab83a80c
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/cfa26f03cb21788bb35d1521c330e1d7ab83a80c
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-20 (Wed, 20 Nov 2013)

  Changed paths:
    A src/complex_op_int.hpp
    M test/module.mk
    A test/test_complex_op_int.cpp

  Log Message:
  -----------
  Introduce src/complex_op_int.hpp

It enables arithmetic between std::complex<double> and an integral
type, e.g.

    std::complex<double> * 3


  Commit: caec913d554513a968e64d578f5387731f0f5717
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/caec913d554513a968e64d578f5387731f0f5717
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-20 (Wed, 20 Nov 2013)

  Changed paths:
    M meta/Lattice.m
    M src/wrappers.hpp
    M templates/lattice_model_interactions.cpp.in

  Log Message:
  -----------
  Make lattice code independent of softsusy Complex class


  Commit: 840afd6c244b289077e07763d231e0a53db51778
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/840afd6c244b289077e07763d231e0a53db51778
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2013-11-20 (Wed, 20 Nov 2013)

  Changed paths:
    M meta/Lattice.m

  Log Message:
  -----------
  meta/Lattice.m: call diagonalization procedures under own convention


  Commit: 3697d1590f829971134751726816912aa39692a9
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/3697d1590f829971134751726816912aa39692a9
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2014-04-19 (Sat, 19 Apr 2014)

  Changed paths:
    M fflite/defs.h
    M fflite/externals.h
    M fflite/ff.h
    M fflite/ini.F
    M fflite/lt.h

  Log Message:
  -----------
  fflite: sync to LoopTools 2.10


  Commit: 9663997cc99ce5ffb10ef3c92a1cc217e20d3e2d
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/9663997cc99ce5ffb10ef3c92a1cc217e20d3e2d
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2014-04-19 (Sat, 19 Apr 2014)

  Changed paths:
    M fflite/ffca0.F
    M fflite/ffcb0.F
    M fflite/ffxa0.F
    M fflite/ffxb0.F

  Log Message:
  -----------
  fflite: restore documentation of arguments from original ff


  Commit: 0f3c59bc17f5e5a2637a6dc0c55226030fdeca52
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/0f3c59bc17f5e5a2637a6dc0c55226030fdeca52
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2014-04-19 (Sat, 19 Apr 2014)

  Changed paths:
    A fflite/ffcc0.F
    R fflite/ffthre.F
    M fflite/module.mk

  Log Message:
  -----------
  fflite: rename ffthre.F to ffcc0.F as in LoopTools


  Commit: f69f37fa4243334eef7965406c6344354dd3fbc2
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/f69f37fa4243334eef7965406c6344354dd3fbc2
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2014-05-26 (Mon, 26 May 2014)

  Changed paths:
    M .gitattributes
    M .gitignore
    M AUTHORS
    A BUGS
    M ChangeLog
    M README
    A TODO
    M config/Makefile.in
    A config/Makefile.standalone.in
    A config/Makefile.tower.in
    M config/config.h.in
    A config/install_stripped.sh
    A config/list_sarah_model_files.sh.in
    M config/module.mk
    A config/remove_export_markers.sh
    M configure
    M createmodel
    A doc/bibliography.bib
    M doc/chapters/output.tex
    M doc/chapters/overview.tex
    M doc/chapters/quick_start.tex
    M doc/chapters/usage.tex
    M doc/flexiblesusy.tex
    A doc/mainpage.dox.in
    M doc/module.mk
    M doc/paper.tex
    A doc/release
    M examples/module.mk
    R examples/run_softpoint.cpp
    R examples/run_softpoint.h
    R examples/run_softsusy.cpp
    A examples/standalone-model/standalone.cpp
    A examples/standalone-rge/standalone.cpp
    M examples/switch_MSSM.cpp
    A examples/tower/LesHouches.in.tower
    A examples/tower/MSSM_MSSMRHN_initial_guesser.hpp
    A examples/tower/MSSM_MSSMRHN_matching.hpp
    A examples/tower/MSSM_MSSMRHN_spectrum_generator.hpp
    A examples/tower/MSSM_MSSMRHN_two_scale_initial_guesser.cpp
    A examples/tower/MSSM_MSSMRHN_two_scale_initial_guesser.hpp
    A examples/tower/MSSM_MSSMRHN_two_scale_matching.cpp
    A examples/tower/MSSM_MSSMRHN_two_scale_matching.hpp
    A examples/tower/run_example.sh
    A examples/tower/run_tower.cpp
    A fflite/BcoeffAD.F
    M fflite/fflite.hpp
    M fflite/module.mk
    M legacy/conversion.cpp
    M legacy/conversion.hpp
    M legacy/diagonalization.cpp
    M legacy/diagonalization.hpp
    M legacy/module.mk
    M legacy/rk_legacy.hpp
    M meta/AnomalousDimension.m
    M meta/BetaFunction.m
    M meta/CConversion.m
    M meta/Constraint.m
    M meta/EWSB.m
    M meta/FlexibleSUSY.m
    M meta/LoopMasses.m
    M meta/Parameters.m
    M meta/SelfEnergies.m
    M meta/TestSuite.m
    M meta/ThresholdCorrections.m
    M meta/Traces.m
    M meta/TreeMasses.m
    M meta/Vertices.m
    A meta/WeinbergAngle.m
    M meta/WriteOut.m
    M meta/module.mk
    A model_files/E6SSM/FlexibleSUSY.m.in
    A model_files/FlexibleSUSY.m.in
    A model_files/InertMSSM/FlexibleSUSY.m.in
    A model_files/LHInputMSSM/FlexibleSUSY.m.in
    A model_files/MRSSM/FlexibleSUSY.m.in
    A model_files/MRSSM/LesHouches.in.MRSSM
    A model_files/MSSM/FlexibleSUSY.m.in
    A model_files/MSSM/LesHouches.in.MSSM
    A model_files/MSSMCPV/FlexibleSUSY.m.in
    A model_files/MSSMNoFV/FlexibleSUSY.m.in
    A model_files/MSSMRHN/FlexibleSUSY.m.in
    A model_files/NMSSM/FlexibleSUSY.m.in
    A model_files/NMSSM/LesHouches.in.NMSSM
    A model_files/NUHMSSM/FlexibleSUSY.m.in
    A model_files/NUHMSSM/LesHouches.in.NUHMSSM
    A model_files/NoYukawaMSSM/FlexibleSUSY.m.in
    A model_files/SM/FlexibleSUSY.m.in
    A model_files/SMSSM/FlexibleSUSY.m.in
    A model_files/UMSSM/FlexibleSUSY.m.in
    A model_files/YukawaCMSSM/FlexibleSUSY.m.in
    A model_files/lowMSSM/FlexibleSUSY.m.in
    A model_files/lowMSSM/LesHouches.in.lowMSSM
    A model_files/minMSSM/FlexibleSUSY.m.in
    A model_files/rootMSSM/FlexibleSUSY.m.in
    A models/SoftsusyMSSM/SoftsusyMSSM.hpp
    A models/SoftsusyMSSM/SoftsusyMSSM_parameter_point.hpp
    A models/SoftsusyMSSM/SoftsusyMSSM_solver.hpp
    A models/SoftsusyMSSM/SoftsusyMSSM_two_scale.cpp
    A models/SoftsusyMSSM/SoftsusyMSSM_two_scale.hpp
    A models/SoftsusyMSSM/SoftsusyMSSM_two_scale_convergence_tester.cpp
    A models/SoftsusyMSSM/SoftsusyMSSM_two_scale_convergence_tester.hpp
    A models/SoftsusyMSSM/SoftsusyMSSM_two_scale_initial_guesser.cpp
    A models/SoftsusyMSSM/SoftsusyMSSM_two_scale_initial_guesser.hpp
    A models/SoftsusyMSSM/SoftsusyMSSM_two_scale_low_scale_constraint.cpp
    A models/SoftsusyMSSM/SoftsusyMSSM_two_scale_low_scale_constraint.hpp
    A models/SoftsusyMSSM/SoftsusyMSSM_two_scale_sugra_constraint.cpp
    A models/SoftsusyMSSM/SoftsusyMSSM_two_scale_sugra_constraint.hpp
    A models/SoftsusyMSSM/SoftsusyMSSM_two_scale_susy_scale_constraint.cpp
    A models/SoftsusyMSSM/SoftsusyMSSM_two_scale_susy_scale_constraint.hpp
    M models/SoftsusyMSSM/module.mk
    R models/SoftsusyMSSM/mssm.hpp
    M models/SoftsusyMSSM/mssmUtils.h
    R models/SoftsusyMSSM/mssm_parameter_point.hpp
    R models/SoftsusyMSSM/mssm_solver.h
    R models/SoftsusyMSSM/mssm_two_scale.cpp
    R models/SoftsusyMSSM/mssm_two_scale.hpp
    R models/SoftsusyMSSM/mssm_two_scale_convergence_tester.cpp
    R models/SoftsusyMSSM/mssm_two_scale_convergence_tester.hpp
    R models/SoftsusyMSSM/mssm_two_scale_initial_guesser.cpp
    R models/SoftsusyMSSM/mssm_two_scale_initial_guesser.hpp
    R models/SoftsusyMSSM/mssm_two_scale_low_scale_constraint.cpp
    R models/SoftsusyMSSM/mssm_two_scale_low_scale_constraint.hpp
    R models/SoftsusyMSSM/mssm_two_scale_sugra_constraint.cpp
    R models/SoftsusyMSSM/mssm_two_scale_sugra_constraint.hpp
    R models/SoftsusyMSSM/mssm_two_scale_susy_scale_constraint.cpp
    R models/SoftsusyMSSM/mssm_two_scale_susy_scale_constraint.hpp
    M models/SoftsusyMSSM/physpars.cpp
    M models/SoftsusyMSSM/physpars.h
    A models/SoftsusyMSSM/run_SoftsusyMSSM.cpp
    M models/SoftsusyMSSM/softsusy.cpp
    M models/SoftsusyMSSM/softsusy.h
    M models/SoftsusyMSSM/susy.cpp
    R models/SoftsusyMSSM/twoloophiggs.f
    R models/SoftsusyMSSM/twoloophiggs.h
    A models/SoftsusyNMSSM/SoftsusyNMSSM.hpp
    A models/SoftsusyNMSSM/SoftsusyNMSSM_parameter_point.hpp
    A models/SoftsusyNMSSM/SoftsusyNMSSM_two_scale.cpp
    A models/SoftsusyNMSSM/SoftsusyNMSSM_two_scale.hpp
    A models/SoftsusyNMSSM/SoftsusyNMSSM_two_scale_convergence_tester.cpp
    A models/SoftsusyNMSSM/SoftsusyNMSSM_two_scale_convergence_tester.hpp
    A models/SoftsusyNMSSM/SoftsusyNMSSM_two_scale_initial_guesser.cpp
    A models/SoftsusyNMSSM/SoftsusyNMSSM_two_scale_initial_guesser.hpp
    A models/SoftsusyNMSSM/SoftsusyNMSSM_two_scale_low_scale_constraint.cpp
    A models/SoftsusyNMSSM/SoftsusyNMSSM_two_scale_low_scale_constraint.hpp
    A models/SoftsusyNMSSM/SoftsusyNMSSM_two_scale_sugra_constraint.cpp
    A models/SoftsusyNMSSM/SoftsusyNMSSM_two_scale_sugra_constraint.hpp
    A models/SoftsusyNMSSM/SoftsusyNMSSM_two_scale_susy_scale_constraint.cpp
    A models/SoftsusyNMSSM/SoftsusyNMSSM_two_scale_susy_scale_constraint.hpp
    M models/SoftsusyNMSSM/module.mk
    R models/SoftsusyNMSSM/nmssm2loop.f
    R models/SoftsusyNMSSM/nmssm2loop.h
    M models/SoftsusyNMSSM/nmssmsoftsusy.cpp
    M models/SoftsusyNMSSM/nmssmsoftsusy.h
    M models/SoftsusyNMSSM/nmssmsusy.cpp
    A models/SoftsusyNMSSM/run_softpoint.cpp
    A models/SoftsusyNMSSM/run_softpoint.h
    R models/SoftsusyNMSSM/snmssm.hpp
    R models/SoftsusyNMSSM/snmssm_parameter_point.hpp
    R models/SoftsusyNMSSM/snmssm_two_scale.cpp
    R models/SoftsusyNMSSM/snmssm_two_scale.hpp
    R models/SoftsusyNMSSM/snmssm_two_scale_convergence_tester.cpp
    R models/SoftsusyNMSSM/snmssm_two_scale_convergence_tester.hpp
    R models/SoftsusyNMSSM/snmssm_two_scale_initial_guesser.cpp
    R models/SoftsusyNMSSM/snmssm_two_scale_initial_guesser.hpp
    R models/SoftsusyNMSSM/snmssm_two_scale_low_scale_constraint.cpp
    R models/SoftsusyNMSSM/snmssm_two_scale_low_scale_constraint.hpp
    R models/SoftsusyNMSSM/snmssm_two_scale_sugra_constraint.cpp
    R models/SoftsusyNMSSM/snmssm_two_scale_sugra_constraint.hpp
    R models/SoftsusyNMSSM/snmssm_two_scale_susy_scale_constraint.cpp
    R models/SoftsusyNMSSM/snmssm_two_scale_susy_scale_constraint.hpp
    M models/fmssm/fmssm_lattice.cpp
    M models/fmssm/module.mk
    M models/fmssmn/fmssmn_lattice.cpp
    M models/fmssmn/module.mk
    M models/smcw/smcw_two_scale.cpp
    M models/smcw/smcw_two_scale.hpp
    A sarah/E6SSM/E6SSM.m
    A sarah/E6SSM/parameters.m
    A sarah/E6SSM/particles.m
    A sarah/E6SSMnew/E6SSMnew.m
    A sarah/E6SSMnew/parameters.m
    A sarah/E6SSMnew/particles.m
    A sarah/InertMSSM/InertMSSM.m
    A sarah/InertMSSM/parameters.m
    A sarah/InertMSSM/particles.m
    A sarah/MSSMNoFV/MSSMNoFV.m
    A sarah/MSSMNoFV/parameters.m
    A sarah/MSSMNoFV/particles.m
    A sarah/MSSMRHN/MSSMRHN.m
    A sarah/MSSMRHN/parameters.m
    A sarah/MSSMRHN/particles.m
    A sarah/NoYukawaMSSM/NoYukawaMSSM.m
    A sarah/NoYukawaMSSM/parameters.m
    A sarah/NoYukawaMSSM/particles.m
    A sarah/myE6SSM/myE6SSM.m
    A sarah/myE6SSM/parameters.m
    A sarah/myE6SSM/particles.m
    M slhaea/module.mk
    M slhaea/slhaea.h
    M src/SM.hpp
    M src/betafunction.cpp
    M src/betafunction.hpp
    A src/build_info.cpp
    A src/build_info.hpp
    M src/command_line_options.cpp
    M src/command_line_options.hpp
    M src/coupling_monitor.hpp
    M src/error.hpp
    M src/lattice_solver.cpp
    M src/linalg.cpp
    M src/linalg.h
    M src/linalg2.hpp
    M src/logger.hpp
    M src/mathdefs.hpp
    M src/minimizer.hpp
    M src/module.mk
    A src/mssm_twoloophiggs.f
    A src/mssm_twoloophiggs.h
    M src/mycomplex.h
    A src/nmssm2loop.f
    A src/nmssm2loop.h
    A src/nmssm_twoloophiggs.h
    M src/numerics.cpp
    M src/numerics.h
    M src/numerics.hpp
    M src/problems.hpp
    R src/program_options.cpp
    R src/program_options.hpp
    M src/pv.cpp
    M src/pv.hpp
    M src/rge.cpp
    M src/rk.cpp
    M src/rk.hpp
    M src/root_finder.hpp
    M src/scan.hpp
    A src/sfermions.cpp
    A src/sfermions.hpp
    M src/slha_io.cpp
    M src/slha_io.hpp
    A src/spectrum_generator_settings.cpp
    A src/spectrum_generator_settings.hpp
    R src/stopwatch.cpp
    R src/stopwatch.hpp
    M src/two_scale_constraint.hpp
    M src/two_scale_matching.hpp
    M src/two_scale_running_precision.hpp
    M src/two_scale_solver.cpp
    M src/wrappers.cpp
    M src/wrappers.hpp
    R templates/E6SSM/FlexibleSUSY.m.in
    R templates/FlexibleSUSY.m.in
    R templates/MRSSM/FlexibleSUSY.m.in
    R templates/MRSSM/LesHouches.in.MRSSM
    R templates/MSSM/FlexibleSUSY.m.in
    R templates/MSSM/LesHouches.in.MSSM
    R templates/NMSSM/FlexibleSUSY.m.in
    R templates/NMSSM/LesHouches.in.NMSSM
    R templates/SM/FlexibleSUSY.m.in
    R templates/SMSSM/FlexibleSUSY.m.in
    R templates/UMSSM/FlexibleSUSY.m.in
    R templates/YukawaCMSSM/FlexibleSUSY.m.in
    M templates/info.cpp.in
    M templates/info.hpp.in
    M templates/lattice_model.hpp.in
    R templates/lowMSSM/FlexibleSUSY.m.in
    R templates/lowMSSM/LesHouches.in.lowMSSM
    M templates/low_scale_spectrum_generator.hpp.in
    R templates/minMSSM/FlexibleSUSY.m.in
    M templates/module.mk
    M templates/module.mk.in
    M templates/physical.cpp.in
    M templates/physical.hpp.in
    R templates/plot_rge_running.gnuplot.in
    A templates/plot_rgflow.gnuplot.in
    M templates/plot_spectrum.gnuplot.in
    R templates/rootMSSM/FlexibleSUSY.m.in
    M templates/run.cpp.in
    M templates/scan.cpp.in
    M templates/slha_io.cpp.in
    M templates/slha_io.hpp.in
    M templates/spectrum_generator.hpp.in
    M templates/start.m.in
    A templates/two_scale.mk.in
    M templates/two_scale_high_scale_constraint.cpp.in
    M templates/two_scale_initial_guesser.cpp.in
    M templates/two_scale_initial_guesser.hpp.in
    M templates/two_scale_initial_guesser_low_scale_model.cpp.in
    M templates/two_scale_initial_guesser_low_scale_model.hpp.in
    M templates/two_scale_low_scale_constraint.cpp.in
    M templates/two_scale_low_scale_constraint.hpp.in
    M templates/two_scale_model.cpp.in
    M templates/two_scale_model.hpp.in
    A templates/two_scale_soft_beta_.cpp.in
    M templates/two_scale_soft_parameters.cpp.in
    M templates/two_scale_soft_parameters.hpp.in
    A templates/two_scale_susy_beta_.cpp.in
    M templates/two_scale_susy_parameters.cpp.in
    M templates/two_scale_susy_parameters.hpp.in
    M templates/two_scale_susy_scale_constraint.cpp.in
    M templates/utilities.cpp.in
    M templates/utilities.hpp.in
    R test/input_MSSM.slha2
    M test/module.mk
    R test/slha_generic.slha2
    R test/sminput.slha2
    A test/stopwatch.cpp
    A test/stopwatch.hpp
    M test/test.h
    A test/test_BetaFunction.m
    M test/test_CConversion.m
    M test/test_MSSM.hpp
    A test/test_MSSMNoFV.hpp
    A test/test_MSSMNoFV_beta_functions.cpp
    A test/test_MSSMNoFV_low_scale_constraint.cpp
    A test/test_MSSMNoFV_tree_level_spectrum.cpp
    M test/test_MSSM_higgs_iteration.cpp
    M test/test_MSSM_high_scale_constraint.cpp
    A test/test_MSSM_info.cpp
    M test/test_MSSM_initial_guesser.cpp
    M test/test_MSSM_low_scale_constraint.cpp
    M test/test_MSSM_model.cpp
    A test/test_MSSM_slha_input.cpp
    M test/test_MSSM_slha_output.cpp
    A test/test_MSSM_slha_output.in.spc
    M test/test_MSSM_spectrum.cpp
    M test/test_MSSM_susy_scale_constraint.cpp
    M test/test_NMSSM.hpp
    M test/test_NMSSM_ewsb.cpp
    M test/test_NMSSM_high_scale_constraint.cpp
    M test/test_NMSSM_initial_guesser.cpp
    M test/test_NMSSM_low_scale_constraint.cpp
    M test/test_NMSSM_one_loop_spectrum.cpp
    A test/test_NMSSM_self_energies.cpp
    M test/test_NMSSM_spectrum.cpp
    M test/test_NMSSM_susy_scale_constraint.cpp
    M test/test_SMSSM_ewsb.cpp
    M test/test_SMSSM_one_loop_spectrum.cpp
    A test/test_Vertices.m
    M test/test_benchmark.cpp
    A test/test_benchmark.in.spc.in
    M test/test_betafunction.cpp
    M test/test_linalg2.cpp
    M test/test_logger.cpp
    M test/test_lowMSSM.sh
    M test/test_pv.cpp
    A test/test_pv_crosschecks.cpp
    A test/test_pv_crosschecks.sh
    M test/test_rk.cpp
    A test/test_sfermions.cpp
    M test/test_slha_io.cpp
    M test/test_sminput.cpp
    A test/test_sminput.in.spc
    A test/test_standalone.sh
    A test/test_tower.sh
    M test/test_two_scale_mssm_initial_guesser.cpp
    M test/test_two_scale_mssm_solver.cpp
    M test/test_two_scale_sm_smcw_integration.cpp
    M test/test_two_scale_solver.cpp
    M test/test_wrappers.cpp

  Log Message:
  -----------
  Merge branch 'development' into lattice

Conflicts:
	config/Makefile.in
	configure
	examples/module.mk
	fflite/fflite.hpp
	fflite/module.mk
	meta/FlexibleSUSY.m
	src/lattice_solver.cpp
	src/module.mk
	src/pv.cpp
	src/pv.hpp
	src/wrappers.hpp
	templates/lattice_model.hpp.in
	templates/module.mk.in
	test/module.mk
	test/test_pv.cpp


  Commit: 87e5b069e8f8ef222e4021d46ce7a2dd0faa337a
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/87e5b069e8f8ef222e4021d46ce7a2dd0faa337a
  Author: Peter Athron <peter.athron at adelaide.edu.au>
  Date:   2014-05-27 (Tue, 27 May 2014)

  Changed paths:
    M doc/paper.tex

  Log Message:
  -----------
  very minor change to english and added comment about B\mu = 0 claim.
Wanted to make change when spotted or I'd forget. hope doesn't cause merge
problems with Dominik.


Compare: https://github.com/FlexibleSUSY/FlexibleSUSY/compare/e8ef26472a4a^...87e5b069e8f8


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